View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14949_high_8 (Length: 378)

Name: NF14949_high_8
Description: NF14949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14949_high_8
NF14949_high_8
[»] chr6 (9 HSPs)
chr6 (89-167)||(173491-173569)
chr6 (89-153)||(15717444-15717508)
chr6 (89-153)||(17199389-17199453)
chr6 (92-153)||(17199287-17199348)
chr6 (89-153)||(17199600-17199664)
chr6 (101-140)||(30260259-30260298)
chr6 (102-145)||(31153933-31153976)
chr6 (89-145)||(7690524-7690581)
chr6 (89-130)||(15716415-15716456)
[»] chr3 (11 HSPs)
chr3 (89-167)||(31903341-31903419)
chr3 (89-167)||(33543336-33543414)
chr3 (89-153)||(36591110-36591174)
chr3 (89-150)||(11235492-11235553)
chr3 (89-153)||(33544262-33544326)
chr3 (95-153)||(36589998-36590056)
chr3 (89-153)||(35343361-35343425)
chr3 (106-153)||(30162292-30162339)
chr3 (101-140)||(21170744-21170783)
chr3 (101-138)||(47094708-47094745)
chr3 (101-138)||(53136492-53136529)
[»] chr4 (5 HSPs)
chr4 (204-340)||(1301187-1301323)
chr4 (89-153)||(35012004-35012068)
chr4 (89-152)||(13210593-13210656)
chr4 (101-139)||(45048747-45048785)
chr4 (101-138)||(43724449-43724486)
[»] chr7 (12 HSPs)
chr7 (89-167)||(25965531-25965609)
chr7 (89-167)||(34237817-34237889)
chr7 (89-153)||(25964491-25964555)
chr7 (89-153)||(33161765-33161829)
chr7 (89-153)||(34239255-34239319)
chr7 (89-145)||(26403780-26403836)
chr7 (102-145)||(43655450-43655493)
chr7 (101-145)||(28346593-28346637)
chr7 (101-140)||(40754837-40754876)
chr7 (89-131)||(26405751-26405793)
chr7 (89-125)||(36389243-36389279)
chr7 (104-140)||(40756970-40757006)
[»] chr8 (7 HSPs)
chr8 (89-153)||(13904205-13904269)
chr8 (89-153)||(13907242-13907306)
chr8 (89-153)||(11918692-11918756)
chr8 (101-140)||(7780202-7780241)
chr8 (101-140)||(7827168-7827207)
chr8 (89-130)||(13906026-13906067)
chr8 (121-153)||(13907052-13907084)
[»] chr5 (12 HSPs)
chr5 (109-167)||(7672324-7672382)
chr5 (89-153)||(11785495-11785559)
chr5 (89-167)||(1666068-1666149)
chr5 (101-145)||(41555192-41555236)
chr5 (101-145)||(25062292-25062336)
chr5 (101-140)||(5625456-5625495)
chr5 (101-140)||(20875076-20875115)
chr5 (101-140)||(27822780-27822819)
chr5 (101-145)||(25084676-25084720)
chr5 (101-145)||(25142647-25142691)
chr5 (89-145)||(41556708-41556764)
chr5 (101-145)||(42831030-42831074)
[»] chr1 (11 HSPs)
chr1 (204-268)||(51517904-51517968)
chr1 (204-267)||(7904902-7904965)
chr1 (204-267)||(8003595-8003658)
chr1 (89-153)||(34660650-34660714)
chr1 (89-153)||(34661731-34661795)
chr1 (205-267)||(7901449-7901511)
chr1 (205-267)||(7903280-7903342)
chr1 (101-138)||(48344318-48344355)
chr1 (101-138)||(48350690-48350727)
chr1 (280-340)||(7901387-7901447)
chr1 (280-340)||(7903218-7903278)
[»] chr2 (4 HSPs)
chr2 (89-145)||(13587405-13587461)
chr2 (89-145)||(13588094-13588150)
chr2 (89-128)||(32343005-32343044)
chr2 (101-138)||(35997684-35997721)
[»] scaffold0360 (2 HSPs)
scaffold0360 (101-145)||(7655-7699)
scaffold0360 (101-145)||(10676-10720)


Alignment Details
Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 89 - 167
Target Start/End: Original strand, 173491 - 173569
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgacacgtgtcacgatctgacagggca 167  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  173491 ttgtccttttgtgcgttcccgccgtttgaaatggcgggactggccgccggtccgacacgtgtcacgatctgacagggca 173569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 15717508 - 15717444
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgacacgtgtcac 153  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  15717508 ttgtccttttgtgcgttcccgccatttgaaacggcgggactagccgccggtctgacacgtgtcac 15717444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 17199389 - 17199453
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgacacgtgtcac 153  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  17199389 ttgtccttttgtgcgttcccgccatttgaaacggcgggactagccgccggtctgacacgtgtcac 17199453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 92 - 153
Target Start/End: Original strand, 17199287 - 17199348
Alignment:
Q  92 tccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgacacgtgtcac 153  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  17199287 tccttttgtgcgttcccgccatttgaaacggcgggactagccgccggtctgacacgtgtcac 17199348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 17199664 - 17199600
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgacacgtgtcac 153  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||    
T  17199664 ttgtccttttgtgcgttcctgccatttgaaacggcgggactggccgctggtctgacacgtgtcac 17199600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 30260259 - 30260298
Alignment:
Q  101 gcgttcccgccatttgaaacggcgggactggccgccggtc 140  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  30260259 gcgttcccgccatttgaaacggcgggattggccgccggtc 30260298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 145
Target Start/End: Original strand, 31153933 - 31153976
Alignment:
Q  102 cgttcccgccatttgaaacggcgggactggccgccggtccgaca 145  Q
    |||||||||||||||||||||||| |||||||||||||| ||||    
T  31153933 cgttcccgccatttgaaacggcggaactggccgccggtctgaca 31153976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 7690581 - 7690524
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggact-ggccgccggtccgaca 145  Q
    ||||||||||   |||||||| ||||||||||||||||||| ||||||||||| ||||    
T  7690581 ttgtccttttcctcgttcccgtcatttgaaacggcgggactgggccgccggtctgaca 7690524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 15716415 - 15716456
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactg 130  Q
    ||||||||||||| ||||||| |||||||||||||| |||||    
T  15716415 ttgtccttttgtgtgttcccgtcatttgaaacggcgagactg 15716456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 31903419 - 31903341
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgacacgtgtcacgatctgacagggca 167  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31903419 ttgtccttttgtgcgttcccgccgtttgaaatggcgggactggccgccggtccgacacgtgtcacgatctgacagggca 31903341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 89 - 167
Target Start/End: Original strand, 33543336 - 33543414
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgacacgtgtcacgatctgacagggca 167  Q
    ||||||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  33543336 ttgtccttttgtgcgttcccgctgttttaaatggcgggactggccgccggtccgacacgtgtcacgatctgacagggca 33543414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 36591174 - 36591110
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgacacgtgtcac 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36591174 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtctgacacgtgtcac 36591110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 11235492 - 11235553
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgacacgtgt 150  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  11235492 ttgtctttttgtgcgttcccgccatttgaaacggcgggactggccgccggtttgacacgtgt 11235553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 33544326 - 33544262
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgacacgtgtcac 153  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||| |||||| ||||||||||||    
T  33544326 ttgtccttttgtgcgttcccgccgtttgaaatggcgggactggccaccggtctgacacgtgtcac 33544262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 36589998 - 36590056
Alignment:
Q  95 ttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgacacgtgtcac 153  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||    
T  36589998 ttttgtgcgttcccgccatttgaaacggcgggactagccgtcggtctgacacgtgtcac 36590056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 35343361 - 35343425
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgacacgtgtcac 153  Q
    ||||||||| | ||||| ||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  35343361 ttgtcctttagcgcgtttccgccatttgaaacgacgggactggccgccggtctgacacatgtcac 35343425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 153
Target Start/End: Original strand, 30162292 - 30162339
Alignment:
Q  106 cccgccatttgaaacggcgggactggccgccggtccgacacgtgtcac 153  Q
    |||||||||||||||||||||||||||||||  || ||||||||||||    
T  30162292 cccgccatttgaaacggcgggactggccgccaatctgacacgtgtcac 30162339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 21170744 - 21170783
Alignment:
Q  101 gcgttcccgccatttgaaacggcgggactggccgccggtc 140  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  21170744 gcgttcccgccatctgaaatggcgggactggccgccggtc 21170783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 47094708 - 47094745
Alignment:
Q  101 gcgttcccgccatttgaaacggcgggactggccgccgg 138  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  47094708 gcgttcccgccatctgaaatggcgggactggccgccgg 47094745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 53136492 - 53136529
Alignment:
Q  101 gcgttcccgccatttgaaacggcgggactggccgccgg 138  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  53136492 gcgttcccgccatctgaaatggcgggactggccgccgg 53136529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 204 - 340
Target Start/End: Complemental strand, 1301323 - 1301187
Alignment:
Q  204 tggagagttgcaaagagttgcattatgcctttgtcttagaaaggtaatttatgtttcatccttgaaaactgattgagattgcttgtgctccttaattctg 303  Q
    |||||||||||||||||||   ||||| ||||||||| |||||||| |||| |||||||||||||||||||  | |||||||||| || ||||||||||     
T  1301323 tggagagttgcaaagagtttacttatgtctttgtcttggaaaggtattttaagtttcatccttgaaaactgcataagattgcttgcgcaccttaattcta 1301224  T
Q  304 gtaactgccctctattttctttcctttctacattctt 340  Q
    ||  ||||||| | ||||||||||||| |||||||||    
T  1301223 gtgtctgccctgttttttctttcctttttacattctt 1301187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 35012004 - 35012068
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgacacgtgtcac 153  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||    
T  35012004 ttgtccttttgtgcgttcccgccgtttgaaatggcgggactggccgccggtcggacacgtgtcac 35012068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 13210656 - 13210593
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgacacgtgtca 152  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  13210656 ttgtctttttgtgcgttcccgccatttgaaacggcgggactgaccgccggtctgacacgtgtca 13210593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 45048785 - 45048747
Alignment:
Q  101 gcgttcccgccatttgaaacggcgggactggccgccggt 139  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  45048785 gcgttcccgccatctgaaatggcgggactggccgccggt 45048747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 43724449 - 43724486
Alignment:
Q  101 gcgttcccgccatttgaaacggcgggactggccgccgg 138  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  43724449 gcgttcccgccatctgaaatggcgggactggccgccgg 43724486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 25965609 - 25965531
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgacacgtgtcacgatctgacagggca 167  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||| ||||||||||    
T  25965609 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggtcgacggttcgacacgtgtcacgatgtgacagggca 25965531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 89 - 167
Target Start/End: Original strand, 34237817 - 34237889
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgacacgtgtcacgatctgacagggca 167  Q
    |||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||    
T  34237817 ttgtccttttgtgcgttcccgccatttgaaacggcgg------ccgccggtccgacacgtgtcacgatctgacagggca 34237889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 25964491 - 25964555
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgacacgtgtcac 153  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||    
T  25964491 ttgtccttttgtgcgttcccgccgtttgaaatggcgggactggccgccggtctgacacgtgtcac 25964555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 33161829 - 33161765
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgacacgtgtcac 153  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||    
T  33161829 ttgtccttttgtgcgttcccgccgtttgaaatggcgggactggccgccggtctgacacgtgtcac 33161765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 34239319 - 34239255
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgacacgtgtcac 153  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||  ||||||||||||    
T  34239319 ttgtccttttgtgcgttcccgccgtttgaaatggcgggactggccgccggtttgacacgtgtcac 34239255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 26403780 - 26403836
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgaca 145  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||    
T  26403780 ttgtccttttgtgcgttcccgccatctgaaacggcaggactggccgccggtctgaca 26403836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 43655493 - 43655450
Alignment:
Q  102 cgttcccgccatttgaaacggcgggactggccgccggtccgaca 145  Q
    |||||||||||| |||||||||||||||||||||||||| ||||    
T  43655493 cgttcccgccatctgaaacggcgggactggccgccggtctgaca 43655450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 28346593 - 28346637
Alignment:
Q  101 gcgttcccgccatttgaaacggcgggactggccgccggtccgaca 145  Q
    ||||||||||||| ||||| |||||||||||||||||||| ||||    
T  28346593 gcgttcccgccatctgaaatggcgggactggccgccggtctgaca 28346637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 40754837 - 40754876
Alignment:
Q  101 gcgttcccgccatttgaaacggcgggactggccgccggtc 140  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  40754837 gcgttcccgccatctgaaatggcgggactggccgccggtc 40754876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 26405793 - 26405751
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactgg 131  Q
    ||||||||||||||||||||| ||| |||||||| ||||||||    
T  26405793 ttgtccttttgtgcgttcccgtcatctgaaacggggggactgg 26405751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 36389279 - 36389243
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgg 125  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  36389279 ttgtccttttgtgcgttcccgccgtttgaaatggcgg 36389243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 40757006 - 40756970
Alignment:
Q  104 ttcccgccatttgaaacggcgggactggccgccggtc 140  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  40757006 ttcccgccatctgaaatggcgggactggccgccggtc 40756970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 13904205 - 13904269
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgacacgtgtcac 153  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  13904205 ttgtccttttgtgcgttcccgccatttgaaacggcggaactggccgccggtctgacacgtgtcac 13904269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 13907306 - 13907242
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgacacgtgtcac 153  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||    
T  13907306 ttgtccttttgtgcgttcccgccctttgaaagggcgggactggccgccggtctgacacgtgtcac 13907242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 11918692 - 11918756
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgacacgtgtcac 153  Q
    ||||||||| | |||||||||||||||||||||||||||||| ||||||||| ||||| ||||||    
T  11918692 ttgtcctttagcgcgttcccgccatttgaaacggcgggactgaccgccggtctgacacatgtcac 11918756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 7780202 - 7780241
Alignment:
Q  101 gcgttcccgccatttgaaacggcgggactggccgccggtc 140  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  7780202 gcgttcccgccatctgaaatggcgggactggccgccggtc 7780241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 7827168 - 7827207
Alignment:
Q  101 gcgttcccgccatttgaaacggcgggactggccgccggtc 140  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  7827168 gcgttcccgccatctgaaatggcgggactggccgccggtc 7827207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 13906026 - 13906067
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactg 130  Q
    ||||||||||||| ||||||| |||||||||||||| |||||    
T  13906026 ttgtccttttgtgtgttcccgtcatttgaaacggcgagactg 13906067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 13907084 - 13907052
Alignment:
Q  121 ggcgggactggccgccggtccgacacgtgtcac 153  Q
    |||||||||||||||||||| ||||||||||||    
T  13907084 ggcgggactggccgccggtctgacacgtgtcac 13907052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 7672382 - 7672324
Alignment:
Q  109 gccatttgaaacggcgggactggccgccggtccgacacgtgtcacgatctgacagggca 167  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7672382 gccatttgaaacggcaggactggccgccggtccgacacgtgtcacgatctgacagggca 7672324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 11785559 - 11785495
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgacacgtgtcac 153  Q
    |||||||||| |||||||||||| ||||||| ||||||| |||||||||||| ||||||||||||    
T  11785559 ttgtccttttctgcgttcccgccgtttgaaatggcgggattggccgccggtctgacacgtgtcac 11785495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 167
Target Start/End: Original strand, 1666068 - 1666149
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggac---tggccgccggtccgacacgtgtcacgatctgacagggca 167  Q
    ||||||||||||||||||||||| ||| |||| | |||||   ||||||||||||||||||||||||| ||  |||||||||    
T  1666068 ttgtccttttgtgcgttcccgccgtttcaaactgagggactggtggccgccggtccgacacgtgtcacaatgcgacagggca 1666149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 41555192 - 41555236
Alignment:
Q  101 gcgttcccgccatttgaaacggcgggactggccgccggtccgaca 145  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||    
T  41555192 gcgttcccgccatctgaaacggcgggactggccgccggtctgaca 41555236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 25062336 - 25062292
Alignment:
Q  101 gcgttcccgccatttgaaacggcgggactggccgccggtccgaca 145  Q
    ||||||||||||| ||||| |||||||||||||||||||| ||||    
T  25062336 gcgttcccgccatctgaaatggcgggactggccgccggtctgaca 25062292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 5625456 - 5625495
Alignment:
Q  101 gcgttcccgccatttgaaacggcgggactggccgccggtc 140  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  5625456 gcgttcccgccatctgaaatggcgggactggccgccggtc 5625495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 20875076 - 20875115
Alignment:
Q  101 gcgttcccgccatttgaaacggcgggactggccgccggtc 140  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  20875076 gcgttcccgccatctgaaatggcgggactggccgccggtc 20875115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 140
Target Start/End: Complemental strand, 27822819 - 27822780
Alignment:
Q  101 gcgttcccgccatttgaaacggcgggactggccgccggtc 140  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  27822819 gcgttcccgccatctgaaatggcgggactggccgccggtc 27822780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 25084720 - 25084676
Alignment:
Q  101 gcgttcccgccatttgaaacggcgggactggccgccggtccgaca 145  Q
    ||||||| ||||| ||||| |||||||||||||||||||| ||||    
T  25084720 gcgttcctgccatctgaaatggcgggactggccgccggtctgaca 25084676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 25142691 - 25142647
Alignment:
Q  101 gcgttcccgccatttgaaacggcgggactggccgccggtccgaca 145  Q
    ||||||| ||||| ||||| |||||||||||||||||||| ||||    
T  25142691 gcgttcctgccatctgaaatggcgggactggccgccggtctgaca 25142647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 41556764 - 41556708
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgaca 145  Q
    ||||||||| | ||||||||||||| ||||||| | |||||||||| ||||| ||||    
T  41556764 ttgtcctttagcgcgttcccgccatctgaaacgcccggactggccgtcggtctgaca 41556708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 42831074 - 42831030
Alignment:
Q  101 gcgttcccgccatttgaaacggcgggactggccgccggtccgaca 145  Q
    ||||||||||||| ||||  |||||||||||||||||||| ||||    
T  42831074 gcgttcccgccatctgaactggcgggactggccgccggtctgaca 42831030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 268
Target Start/End: Original strand, 51517904 - 51517968
Alignment:
Q  204 tggagagttgcaaagagttgcattatgcctttgtcttagaaaggtaatttatgtttcatccttga 268  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||    
T  51517904 tggagagttgcaaagagttgccttatgcctttgtcttggaaaggtattttatgtttcatccttga 51517968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 7904965 - 7904902
Alignment:
Q  204 tggagagttgcaaagagttgcattatgcctttgtcttagaaaggtaatttatgtttcatccttg 267  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||    
T  7904965 tggagagttgcaaagagttgccttatgcctttgtcttggaaaggtattttatgtttcatccttg 7904902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 8003595 - 8003658
Alignment:
Q  204 tggagagttgcaaagagttgcattatgcctttgtcttagaaaggtaatttatgtttcatccttg 267  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||    
T  8003595 tggagagttgcaaagagttgccttatgcctttgtcttggaaaggtattttatgtttcatccttg 8003658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 34660650 - 34660714
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgacacgtgtcac 153  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  34660650 ttgtcctttagcgcgttcccgccatttgaaacggcgggactggccgccggtctgacacatgtcac 34660714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 34661795 - 34661731
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgacacgtgtcac 153  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  34661795 ttgtcctttagcgcgttcccgccatttgaaacggcgggactggccgccggtctgacacatgtcac 34661731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 7901511 - 7901449
Alignment:
Q  205 ggagagttgcaaagagttgcattatgcctttgtcttagaaaggtaatttatgtttcatccttg 267  Q
    ||||||||||||||||| || ||||||||||||||| |||||||| |||||||||||||||||    
T  7901511 ggagagttgcaaagagtagccttatgcctttgtcttggaaaggtattttatgtttcatccttg 7901449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 7903342 - 7903280
Alignment:
Q  205 ggagagttgcaaagagttgcattatgcctttgtcttagaaaggtaatttatgtttcatccttg 267  Q
    ||||||||||||||||| || ||||||||||||||| |||||||| |||||||||||||||||    
T  7903342 ggagagttgcaaagagtagccttatgcctttgtcttggaaaggtattttatgtttcatccttg 7903280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 48344318 - 48344355
Alignment:
Q  101 gcgttcccgccatttgaaacggcgggactggccgccgg 138  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  48344318 gcgttcccgccacctgaaacggcgggactggccgccgg 48344355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 48350727 - 48350690
Alignment:
Q  101 gcgttcccgccatttgaaacggcgggactggccgccgg 138  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  48350727 gcgttcccgccacctgaaacggcgggactggccgccgg 48350690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 340
Target Start/End: Complemental strand, 7901447 - 7901387
Alignment:
Q  280 gattgcttgtgctccttaattctggtaactgccctctattttctttcctttctacattctt 340  Q
    |||||||||||| ||||| |||| ||  ||||||| | |||||||||| ||||||||||||    
T  7901447 gattgcttgtgcaccttagttcttgtgtctgccctgtcttttctttcccttctacattctt 7901387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 340
Target Start/End: Complemental strand, 7903278 - 7903218
Alignment:
Q  280 gattgcttgtgctccttaattctggtaactgccctctattttctttcctttctacattctt 340  Q
    |||||||||||| ||||| |||| ||  ||||||| | |||||||||| ||||||||||||    
T  7903278 gattgcttgtgcaccttagttcttgtgtctgccctgtcttttctttcccttctacattctt 7903218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 13587405 - 13587461
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgaca 145  Q
    ||||||||| | ||||||||||||| |||||||||||||||||||||||||| ||||    
T  13587405 ttgtcctttagcgcgttcccgccatctgaaacggcgggactggccgccggtctgaca 13587461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 13588150 - 13588094
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtccgaca 145  Q
    ||||||||| | ||||||||||||| |||||||| ||||||||||||||||| ||||    
T  13588150 ttgtcctttagcgcgttcccgccatctgaaacggtgggactggccgccggtctgaca 13588094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 32343044 - 32343005
Alignment:
Q  89 ttgtccttttgtgcgttcccgccatttgaaacggcgggac 128  Q
    ||||||||| | ||||||||||||||||||||||||||||    
T  32343044 ttgtcctttagcgcgttcccgccatttgaaacggcgggac 32343005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 35997684 - 35997721
Alignment:
Q  101 gcgttcccgccatttgaaacggcgggactggccgccgg 138  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  35997684 gcgttcccgccatctgaaatggcgggactggccgccgg 35997721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 7655 - 7699
Alignment:
Q  101 gcgttcccgccatttgaaacggcgggactggccgccggtccgaca 145  Q
    ||||||||||||| ||||| |||||||||||||||||||| ||||    
T  7655 gcgttcccgccatctgaaatggcgggactggccgccggtctgaca 7699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 10720 - 10676
Alignment:
Q  101 gcgttcccgccatttgaaacggcgggactggccgccggtccgaca 145  Q
    ||||||||||||| ||||| |||||||||||||||||||| ||||    
T  10720 gcgttcccgccatctgaaatggcgggactggccgccggtctgaca 10676  T

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