View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14949_high_9 (Length: 369)
Name: NF14949_high_9
Description: NF14949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14949_high_9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 48664706 - 48664338
Alignment:
| Q |
1 |
tcctttgaaatatagctcggctagttaacacagcgctgataataacacttaagccaggctcagttaagactatatcagcagcacttcttgcggcatctgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48664706 |
tcctttgaaatatagctcggctagttaacacagcgctgataataacacttaagccaggctcagttaagactatatcagcagcacttcttgcggcatctgt |
48664607 |
T |
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| Q |
101 |
agcatcagacacagctattccaatgtctgctttcttcaatgccggggcatcatttactccatctccagtcattccaacaacatgctgtttttcttgtaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48664606 |
agcatcagacacagctattccaatgtctgctttcttcaatgccggggcatcatttactccatctccagtcattccaacaacatgctgtttttcttgtaaa |
48664507 |
T |
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| Q |
201 |
attttaactatttcatatttgtgttctgaaagtattcgttgttaaaactaatcattaagcagatttggtgaaaaagaagcatttatgaaaataacaggta |
300 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
48664506 |
attttaactatttcatatttgtgttctgaaaatattcgttgttaaaactaatcattaagcatatttggtgaaaaagaagcatttatgaaaataacaggta |
48664407 |
T |
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| Q |
301 |
accacatccgcaagattacttcttatttggatggaaaatattaactaatgttgactatggattattata |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48664406 |
accacatccgcaagattacttcttatttggatggaaaatattaactaatgttgactatggattattata |
48664338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 3 - 180
Target Start/End: Complemental strand, 15869285 - 15869108
Alignment:
| Q |
3 |
ctttgaaatatagctcggctagttaacacagcgctgataataacacttaagccaggctcagttaagactatatcagcagcacttcttgcggcatctgtag |
102 |
Q |
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| T |
15869285 |
ctttggaagatagctctacttgttaagacagcactgatgataacactcaaaccaggttctgttaagactatatcagaagcacctcttgcagcatcagtag |
15869186 |
T |
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| Q |
103 |
catcagacacagctattccaatgtctgctttcttcaatgccggggcatcatttactccatctccagtcattccaacaa |
180 |
Q |
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| T |
15869185 |
catcagcaacagcaattccaatatcggcttttttcaatgcaggagcatcattcacaccatctccagtcattccaacaa |
15869108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 27 - 172
Target Start/End: Original strand, 21980457 - 21980602
Alignment:
| Q |
27 |
aacacagcgctgataataacacttaagccaggctcagttaagactatatcagcagcacttcttgcggcatctgtagcatcagacacagctattccaatgt |
126 |
Q |
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|||||||| || | ||| ||||| || || |||||||| ||||| || || | ||||| ||||||||||| || ||||||| ||||| || ||||||| |
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| T |
21980457 |
aacacagcactcacaatcacactcaaacccggctcagtcaagacaatgtctgaggcactccttgcggcatcagttgcatcagcaacagcaataccaatgt |
21980556 |
T |
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| Q |
127 |
ctgctttcttcaatgccggggcatcatttactccatctccagtcat |
172 |
Q |
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| T |
21980557 |
ctgccttcttcaatgctggtgcatcgtttacaccatctccggtcat |
21980602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 29 - 176
Target Start/End: Complemental strand, 1462766 - 1462619
Alignment:
| Q |
29 |
cacagcgctgataataacacttaagccaggctcagttaagactatatcagcagcacttcttgcggcatctgtagcatcagacacagctattccaatgtct |
128 |
Q |
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|||||| |||||||| ||||| | ||||| ||||| | ||| ||||||| ||||||||| || |||||||||||||||| ||||| |||||||| ||| |
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| T |
1462766 |
cacagcactgataatgacactgagaccaggttcagtgaggacaatatcagaagcacttctagcagcatctgtagcatcagcaacagcaattccaatatct |
1462667 |
T |
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| Q |
129 |
gctttcttcaatgccggggcatcatttactccatctccagtcattcca |
176 |
Q |
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|||||||| | |||||||| |||||||| |||||||||||||||||| |
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| T |
1462666 |
gctttctttagcgccggggcgtcatttacaccatctccagtcattcca |
1462619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 1496846 - 1497021
Alignment:
| Q |
1 |
tcctttgaaatatagctcggctagttaacacagcgctgataataacacttaagccaggctcagttaagactatatcagcagcacttcttgcggcatctgt |
100 |
Q |
| |
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|||||||||| || |||||||| || | ||||||||| ||||| ||||| | || || ||||| | ||| ||||||| ||||||||| || |||||||| |
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| T |
1496846 |
tcctttgaaaaatcgctcggctggtgagcacagcgctaataatgacactaagaccgggttcagtgaggacaatatcagaagcacttctagcagcatctgt |
1496945 |
T |
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| Q |
101 |
agcatcagacacagctattccaatgtctgctttcttcaatgccggggcatcatttactccatctccagtcattcca |
176 |
Q |
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| T |
1496946 |
agcatcagcaactgcaattccgatatcggctttctttaacgcaggagcatcgtttacaccatctcctgtcattcca |
1497021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 176
Target Start/End: Complemental strand, 26790508 - 26790368
Alignment:
| Q |
36 |
ctgataataacacttaagccaggctcagttaagactatatcagcagcacttcttgcggcatctgtagcatcagacacagctattccaatgtctgctttct |
135 |
Q |
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|||||||| ||||| | ||||| ||||| | ||| ||||||| ||||||||| || |||||||| ||||||| || || ||||||||||||||||||| |
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| T |
26790508 |
ctgataatgacactaagaccaggttcagtgaggacaatatcagaagcacttctagcagcatctgtggcatcagcaaccgcaattccaatgtctgctttct |
26790409 |
T |
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| Q |
136 |
tcaatgccggggcatcatttactccatctccagtcattcca |
176 |
Q |
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| T |
26790408 |
ttagtgcaggtgcatcgtttacaccatctccagtcattcca |
26790368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 53075372 - 53075493
Alignment:
| Q |
3 |
ctttgaaatatagctcggctagttaacacagcgctgataataacacttaagccaggctcagttaagactatatcagcagcacttcttgcggcatctgtag |
102 |
Q |
| |
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|||||||| ||||||| |||||||| || || ||||| |||||||| || ||||| || || ||||| || |||| ||||| |||||| |||||||||| |
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| T |
53075372 |
ctttgaaaaatagctctactagttaagactgcactgatgataacactcaatccaggttctgtcaagacaatgtcagaagcacctcttgcagcatctgtag |
53075471 |
T |
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| Q |
103 |
catcagacacagctattccaat |
124 |
Q |
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|||||| ||||| |||||||| |
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| T |
53075472 |
catcagcaacagcgattccaat |
53075493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 172
Target Start/End: Complemental strand, 44533010 - 44532841
Alignment:
| Q |
3 |
ctttgaaatatagctcggctagttaacacagcgctgataataacacttaagccaggctcagttaagactatatcagcagcacttcttgcggcatctgtag |
102 |
Q |
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|||||||| ||||||||||| || || ||||| || ||||||||||| | |||||| || || || || ||||| | ||||| | || ||||| |||| |
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| T |
44533010 |
ctttgaaagatagctcggctggtcaaaacagcacttataataacactgaggccaggttctgtcaaaacaatatcggatgcactacgagctgcatcggtag |
44532911 |
T |
|
| Q |
103 |
catcagacacagctattccaatgtctgctttcttcaatgccggggcatcatttactccatctccagtcat |
172 |
Q |
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| T |
44532910 |
catctgcaacggctataccaatgtctgccttcttgagagccggtgcatcattcactccatcaccagtcat |
44532841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 50276288 - 50276209
Alignment:
| Q |
57 |
ggctcagttaagactatatcagcagcacttcttgcggcatctgtagcatcagacacagctattccaatgtctgctttctt |
136 |
Q |
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|||||||| | ||| ||||||| ||||| ||| || |||||||||||||||| ||||| |||||||| |||||| |||| |
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| T |
50276288 |
ggctcagtaaggacaatatcagaagcacctctagcagcatctgtagcatcagcaacagcaattccaatatctgctctctt |
50276209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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