View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14949_low_1 (Length: 678)
Name: NF14949_low_1
Description: NF14949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14949_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 110 - 675
Target Start/End: Original strand, 35550100 - 35550666
Alignment:
| Q |
110 |
ccttgaaagatgaatatttttctgatcaccgatattatggtatatttccttatgtttacttgtactttgannnnnnngattcaagggtgaaatttgattt |
209 |
Q |
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| T |
35550100 |
ccttgaaagatgaatatttttctgatcaccgatatcatggtatatttccttatgtttacttgtactttgatttttttgattcaagggtgaaatttgattt |
35550199 |
T |
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| Q |
210 |
gtgatattggtaatttccctgatctatttgtctttggataaaagcgggaaattttaatactttatcaattgatattttttattggcaattggcgaatttg |
309 |
Q |
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| T |
35550200 |
gtgatattggtaattgccctgatctatttgtctttggatgaaagcgggaaattttaatactttatcaattgatattttttattggcaattggcgaatttg |
35550299 |
T |
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| Q |
310 |
agttttttaatgatattctattaaggtttatagctttgttggatgtgaaagaagnnnnnnnnn-tctaattttgaagagttgagtttttggtggatatat |
408 |
Q |
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| T |
35550300 |
agttttttaatgatattctattaaggtttatagctttgttggatgtgaaagaagaaaaaaaaaatctaatttggaagttttgagtttttggtggatatat |
35550399 |
T |
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| Q |
409 |
attgaagatactagtttatattttctgatctggaaattctttattatgtggaaaatatttgatttttgtactgtgcttaatttttctctgttttattggt |
508 |
Q |
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| T |
35550400 |
attgaagatactagtttatattttctgatctggaaattctttattatgtggaaaatatttgatttttgtactgtgcttaatttttctctgttttattggt |
35550499 |
T |
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| Q |
509 |
gttggcaggtttataattgtcatcaaatttgcagaatttgttgacttgaactggtgaacagtgatagttggtgtcatcagaagtttgtaggttgaatcca |
608 |
Q |
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| T |
35550500 |
gttggcaggtttataattgtcatcaaatttgcagaatttgttgacttgaactggtgaacagtgatagttggtgtcatcataagtttgtaggttgaatcca |
35550599 |
T |
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| Q |
609 |
tattattatttttggannnnnnnggctatcttcaaggttattttaccttggaaaatgatgatgatgt |
675 |
Q |
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| T |
35550600 |
tattattatttttggatttttttggctatcttcagggttattttaccttggaaaatgatgatgatgt |
35550666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 35550008 - 35550037
Alignment:
| Q |
18 |
atagcttgctaaaattgttgtagttattgg |
47 |
Q |
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| T |
35550008 |
atagcttgctaaaattgttgtagttattgg |
35550037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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