View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14949_low_10 (Length: 342)

Name: NF14949_low_10
Description: NF14949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14949_low_10
NF14949_low_10
[»] chr3 (17 HSPs)
chr3 (193-316)||(30489533-30489656)
chr3 (193-311)||(30520352-30520470)
chr3 (77-153)||(30489417-30489493)
chr3 (77-153)||(30520242-30520312)
chr3 (196-316)||(30505370-30505497)
chr3 (237-311)||(30516177-30516247)
chr3 (81-153)||(30516027-30516093)
chr3 (196-296)||(30522226-30522328)
chr3 (238-312)||(30525282-30525356)
chr3 (196-282)||(30487388-30487476)
chr3 (196-294)||(30503504-30503604)
chr3 (111-153)||(30505285-30505327)
chr3 (243-312)||(30487747-30487815)
chr3 (252-312)||(30491711-30491771)
chr3 (209-277)||(30449815-30449885)
chr3 (243-294)||(30483464-30483515)
chr3 (118-151)||(8411988-8412021)
[»] chr5 (2 HSPs)
chr5 (204-288)||(38510667-38510755)
chr5 (245-288)||(38511496-38511539)
[»] chr4 (1 HSPs)
chr4 (195-264)||(38995191-38995262)
[»] chr2 (1 HSPs)
chr2 (243-286)||(29265475-29265518)
[»] chr6 (2 HSPs)
chr6 (242-286)||(6171749-6171793)
chr6 (206-271)||(10594338-10594404)


Alignment Details
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 193 - 316
Target Start/End: Original strand, 30489533 - 30489656
Alignment:
Q  193 acagtcccatcaaattgaattgggatttttcccgaagtgacagatttcataatttacacttgatatgagcccctcaaccttctgactttccattattatg 292  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30489533 acagtcccatcaaattgaattgggttttttaccgcagtgacagatttcataatttacacttgatatgagcccctcaaccttctgactttccattattatg 30489632  T
Q  293 attaataacttatttgtttttaaa 316  Q
    ||||||||||||||||||||||||    
T  30489633 attaataacttatttgtttttaaa 30489656  T

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Target: chr3; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 193 - 311
Target Start/End: Original strand, 30520352 - 30520470
Alignment:
Q  193 acagtcccatcaaattgaattgggatttttcccgaagtgacagatttcataatttacacttgatatgagcccctcaaccttctgactttccattattatg 292  Q
    |||||||| ||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30520352 acagtcccttcaaattgaattgggttttttcctgcagtgacagatttcataatttacacttgatatgagcccctcaaccttctgaccttccattattatg 30520451  T
Q  293 attaataacttatttgttt 311  Q
    |||||||||||||||||||    
T  30520452 attaataacttatttgttt 30520470  T

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Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 30489417 - 30489493
Alignment:
Q  77 taatgaaggttagaacttgaaggtgccgccatacccatacccttttcaccaaaggggtttggctttggcatctcata 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30489417 taatgaaggttagaacttgaaggtgccgccatacccatacccttttcaccaaaggggtttggctttggcatctcata 30489493  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 30520242 - 30520312
Alignment:
Q  77 taatgaaggttagaacttgaaggtgccgccatacccatacccttttcaccaaaggggtttggctttggcatctcata 153  Q
    ||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||    
T  30520242 taatgaaggttagaacttgaaggtgccgccat------acccttttcaccaaaggggtttggctttggcatctcata 30520312  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 196 - 316
Target Start/End: Original strand, 30505370 - 30505497
Alignment:
Q  196 gtcccatcaaattgaattgggatttttcccgaagtgacaga--tttcataatttacacttgatatgagcccctcaaccttctgactttcc------atta 287  Q
    ||||| ||| ||||||||||| |||||||  | ||||||||  |||| ||||||||||||||||||||||||||||| |||||| |||||      ||||    
T  30505370 gtcccttcatattgaattgggttttttccaca-gtgacagagctttcttaatttacacttgatatgagcccctcaactttctgattttccatcattatta 30505468  T
Q  288 ttatgattaataacttatttgtttttaaa 316  Q
    |||| |||| |||||||||||||||||||    
T  30505469 ttattattattaacttatttgtttttaaa 30505497  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 311
Target Start/End: Original strand, 30516177 - 30516247
Alignment:
Q  237 tttcataatttacacttgatatgagcccctcaaccttctgactttccattattatgattaataacttatttgttt 311  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||   |||||||||||    
T  30516177 tttcataatttacacttgatatgagccc-tcaaccttctgattttccattattattattaa---cttatttgttt 30516247  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 30516027 - 30516093
Alignment:
Q  81 gaaggttagaacttgaaggtgccgccatacccatacccttttcaccaaaggggtttggctttggcatctcata 153  Q
    |||||||||||||||||| |||||||||      |||||||||||||||||||||||||||||| ||||||||    
T  30516027 gaaggttagaacttgaagttgccgccat------acccttttcaccaaaggggtttggctttggtatctcata 30516093  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 296
Target Start/End: Original strand, 30522226 - 30522328
Alignment:
Q  196 gtcccatcaaattgaattgggatttttcccgaagtgacagat--ttcataatttacacttgatatgagcccctcaaccttctgactttccattattatga 293  Q
    ||||| ||||||||||||  | |||| |||  ||||||||||  |||| ||||||||||||||||||||||||| | ||||||| |||| ||| ||||||    
T  30522226 gtcccttcaaattgaattcaggttttccccacagtgacagatctttcaaaatttacacttgatatgagcccctcgatcttctgattttctatttttatga 30522325  T
Q  294 tta 296  Q
    |||    
T  30522326 tta 30522328  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 312
Target Start/End: Original strand, 30525282 - 30525356
Alignment:
Q  238 ttcataatttacacttgatatgagcccctcaaccttctgactttccattattatgattaataacttatttgtttt 312  Q
    |||| |||| |||||||||||||||||||||||||||||| |||  ||| || |||||| |||||| ||||||||    
T  30525282 ttcacaattcacacttgatatgagcccctcaaccttctgattttatattgttttgattattaacttttttgtttt 30525356  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 282
Target Start/End: Original strand, 30487388 - 30487476
Alignment:
Q  196 gtcccatcaaattgaattgggatttttcccgaagtgacaga--tttcataatttacacttgatatgagcccctcaaccttctgactttc 282  Q
    ||||| |||||||| |||||| |||||||   |||| ||||  ||||||||||||  ||||||||||||||||||||||||||| ||||    
T  30487388 gtcccttcaaattggattgggttttttcctacagtggcagagctttcataatttatccttgatatgagcccctcaaccttctgattttc 30487476  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 294
Target Start/End: Original strand, 30503504 - 30503604
Alignment:
Q  196 gtcccatcaaattgaattgggatttttcccgaagtgacagattt--cataatttacacttgatatgagcccctcaaccttctgactttccattattatga 293  Q
    ||||| ||||||||||||||  |||||||   ||||| |||| |  || ||||||||||| ||||||||||||||||||||| | |||||||| ||||||    
T  30503504 gtcccttcaaattgaattggattttttcctacagtgatagatctatcaaaatttacacttcatatgagcccctcaaccttctcattttccattcttatga 30503603  T
Q  294 t 294  Q
    |    
T  30503604 t 30503604  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 153
Target Start/End: Original strand, 30505285 - 30505327
Alignment:
Q  111 ccatacccttttcaccaaaggggtttggctttggcatctcata 153  Q
    ||||||||||||||||||| |||| ||||||||||||||||||    
T  30505285 ccatacccttttcaccaaaagggtctggctttggcatctcata 30505327  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 312
Target Start/End: Original strand, 30487747 - 30487815
Alignment:
Q  243 aatttacacttgatatgagcccctcaaccttctgactttccattattatgattaataacttatttgtttt 312  Q
    ||||||||||||||||||||||||||||||||| | |||| ||| || ||| || |||||| ||||||||    
T  30487747 aatttacacttgatatgagcccctcaaccttcttattttcaatttttgtgactattaactt-tttgtttt 30487815  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 312
Target Start/End: Original strand, 30491711 - 30491771
Alignment:
Q  252 ttgatatgagcccctcaaccttctgactttccattattatgattaataacttatttgtttt 312  Q
    ||||||||||||||| |||||||||| |||  ||| ||||||||| |||||| ||||||||    
T  30491711 ttgatatgagccccttaaccttctgattttatattgttatgattattaacttttttgtttt 30491771  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 277
Target Start/End: Original strand, 30449815 - 30449885
Alignment:
Q  209 gaattgggatttttcccgaagtgacagat--ttcataatttacacttgatatgagcccctcaaccttctga 277  Q
    |||||||| ||||||||  ||||| ||||  |||| | |||||||||||||||||||||||||| ||||||    
T  30449815 gaattgggttttttcccacagtgatagatctttcaaattttacacttgatatgagcccctcaacattctga 30449885  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 294
Target Start/End: Original strand, 30483464 - 30483515
Alignment:
Q  243 aatttacacttgatatgagcccctcaaccttctgactttccattattatgat 294  Q
    ||||||||||| ||||||||||||||||||||| | |||  |||||||||||    
T  30483464 aatttacacttcatatgagcccctcaaccttctcattttttattattatgat 30483515  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 151
Target Start/End: Complemental strand, 8412021 - 8411988
Alignment:
Q  118 cttttcaccaaaggggtttggctttggcatctca 151  Q
    ||||||||||||||||||||||||||| ||||||    
T  8412021 cttttcaccaaaggggtttggctttggtatctca 8411988  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 38510667 - 38510755
Alignment:
Q  204 aaattgaattgggattttt--cccgaagtgacagat--ttcataatttacacttgatatgagcccctcaaccttctgactttccattat 288  Q
    ||||||||||||| |||||  |||  ||||||||||  |||| |||||||||||||||||||||||||||||| |||| |||| |||||    
T  38510667 aaattgaattgggttttttttcccacagtgacagatctttcaaaatttacacttgatatgagcccctcaacctactgattttctattat 38510755  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 38511496 - 38511539
Alignment:
Q  245 tttacacttgatatgagcccctcaaccttctgactttccattat 288  Q
    ||||||||||||||||||||||||||||||||| |||| |||||    
T  38511496 tttacacttgatatgagcccctcaaccttctgattttctattat 38511539  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 264
Target Start/End: Complemental strand, 38995262 - 38995191
Alignment:
Q  195 agtcccatcaaattgaattgggatttttcccgaagtgacagat--ttcataatttacacttgatatgagccc 264  Q
    |||||| ||||||||||||||| ||||||||   |||||||||  |||| ||||||||||||||||||||||    
T  38995262 agtcccttcaaattgaattgggttttttcccactgtgacagatctttcaaaatttacacttgatatgagccc 38995191  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 29265475 - 29265518
Alignment:
Q  243 aatttacacttgatatgagcccctcaaccttctgactttccatt 286  Q
    ||||||||||||||||||||||||||||||||| | ||||||||    
T  29265475 aatttacacttgatatgagcccctcaaccttctcattttccatt 29265518  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 6171749 - 6171793
Alignment:
Q  242 taatttacacttgatatgagcccctcaaccttctgactttccatt 286  Q
    |||||||| ||||||||||| ||||| ||||||||| ||||||||    
T  6171749 taatttactcttgatatgagaccctccaccttctgattttccatt 6171793  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 10594338 - 10594404
Alignment:
Q  206 attgaattgggatttttcccgaagtgacagat--ttcataatttacacttgatatgagcccctcaacc 271  Q
    ||||||||||| |||||||   ||||||||||  |||| |||||||||||||||||||||| ||||||    
T  10594338 attgaattggg-tttttcctacagtgacagatctttcaaaatttacacttgatatgagcccttcaacc 10594404  T

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