View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14949_low_11 (Length: 334)
Name: NF14949_low_11
Description: NF14949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14949_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 10193541 - 10193863
Alignment:
| Q |
1 |
caaatgaggcagctagggcaaacaccaattaaggcggaatttccaacagggtgtatgtcaaaattcaatcataaagactaaggtccttggcaaggaagag |
100 |
Q |
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| T |
10193541 |
caaatgaggcagctagggcaaacaccaattaaggcggaatttccaacagggtgtatgtcaaaattcaatcataaagactaaggtccttggcaaggaagag |
10193640 |
T |
|
| Q |
101 |
aacaaagtccactaccatcagtttcaacagaggagcggaaatacaatctaagcgagcaagattctgaatctcatattactctccacaagtgcagcagagc |
200 |
Q |
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| T |
10193641 |
aacaaagtccactaccatcagtttcaacagaggagcggaaatacaatctaagcgagcaagattctgaatctcatattactctccacaagtgcagcagagc |
10193740 |
T |
|
| Q |
201 |
ttttaacccactgggagcagcttccctcatgtaaaggggaaagctttcgtaaaaaacaattctcccttttgaggacaagacgaaatgtttcaggggaaat |
300 |
Q |
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| T |
10193741 |
ttttaacccactgggagcagcttccctcatgtaaaggagaaagctttcgtaaaaaacaattctcccttttgagaacaagacgaaatgtttcaggggaaat |
10193840 |
T |
|
| Q |
301 |
tgacagtagtaggcctttgattc |
323 |
Q |
| |
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| T |
10193841 |
tgacagtagtaggcctttgattc |
10193863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 155 - 323
Target Start/End: Complemental strand, 19459535 - 19459368
Alignment:
| Q |
155 |
agcaagattctgaatctcatattactctccacaagtgcagcagagcttttaacccactgggagcagcttccctcatgtaaaggggaaagctttcgtaaaa |
254 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||||| ||| |||||||| |||||||||||||||||||| |||||||| | | ||| |
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| T |
19459535 |
agcaagattctgaatctcatattacgccccacaagtgcagcagagctttcaacgcactgggaacagcttccctcatgtaaaggtgaaagcttccatcaaa |
19459436 |
T |
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| Q |
255 |
aacaattctcccttttgaggacaagacgaaatgtttcaggggaaattgacagtagtaggcctttgattc |
323 |
Q |
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| T |
19459435 |
agcaattttcccttttgaggacaa-acgaaagatttcaggggaaattgacagtagtaagcctttgattc |
19459368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 19459656 - 19459575
Alignment:
| Q |
7 |
aggcagctagggcaaacaccaattaaggcggaatttccaacagggtgtatgtcaaaattcaatcataaagactaaggtcctt |
88 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| |
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| T |
19459656 |
aggcagctagggcagacaccaattaaggcggaatttccaacaaggtgtatgtcaaaattcaatcataaaggctgaggtcctt |
19459575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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