View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14949_low_12 (Length: 333)
Name: NF14949_low_12
Description: NF14949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14949_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 99 - 318
Target Start/End: Complemental strand, 9453682 - 9453462
Alignment:
| Q |
99 |
gattgaggtaatgaattactattttaaaaatgattacataggcaacgaaaaataaatcatatatggtatcctgttttgaaaaacctacatagaaatggca |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9453682 |
gattgaggtaatgaattactattttaaaaatgattacataagcaacgaaaaataaatcatatatggtatcctgttttgaaaaacctacataaaaatggca |
9453583 |
T |
|
| Q |
199 |
ccaaaa-cttttgaacttggcatacaatatataaactgtgtttgcattttgataagcgaacaaatctatcagtgtagaaattcacatttatggaataact |
297 |
Q |
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|||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9453582 |
ccaaaaacttttgaacttggtatacaacatataaactgtgtttgcattttgataagcgaacaaatctatcagtgtagaaattcacatctatggaataact |
9453483 |
T |
|
| Q |
298 |
atttactactccctatgattt |
318 |
Q |
| |
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|||||||| |||||||||||| |
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| T |
9453482 |
atttactattccctatgattt |
9453462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 121 - 311
Target Start/End: Original strand, 21545071 - 21545261
Alignment:
| Q |
121 |
tttaaaaatgattacataggcaacgaaaaataaatcatatatggtatcctgttttgaaaaacctacatagaaatggcaccaaaacttttgaacttggcat |
220 |
Q |
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|||||||| ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
21545071 |
tttaaaaacaattacataggctacgaaaaataaattatatatggtatcatgttttgaaaaacctacataaaaatgccaccaaaacttttgaacttggcat |
21545170 |
T |
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| Q |
221 |
acaatatataaactgtgtttgcattttgataagcgaacaaatctatcagtgtagaaattcacatttatggaataactatttactactccct |
311 |
Q |
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| T |
21545171 |
actaaatataaaccgcgttcgcattttgataagcgaacaaatctatccgtgtagaaattcacatctattgaataactacttactactccct |
21545261 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 121 - 318
Target Start/End: Original strand, 38944146 - 38944343
Alignment:
| Q |
121 |
tttaaaaatgattacataggcaacgaaaaataaatcatatatggtatcctgttttgaaaaacctacatagaaatggcaccaaaacttttgaacttggcat |
220 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||| |||| |
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| T |
38944146 |
tttaaaaatgattacataggtgagaaaaaataaatcatatatggtatcatgttttgaaaaacctacatagaaatggcaccaaaattttcaaacttagcat |
38944245 |
T |
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| Q |
221 |
acaatatataaactgtgtttgcattttgataagcgaacaaatctatcagtgtagaaattcacatttatggaataactatttactactccctatgattt |
318 |
Q |
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|| |||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||| ||| |||||||| ||||||||||||||||||| |
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| T |
38944246 |
actgcatataaactgtgttcgcattttgattagcgaacaaatctatccgtgtagaaattcacatccatgaaataactacttactactccctatgattt |
38944343 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 298
Target Start/End: Complemental strand, 28127171 - 28127045
Alignment:
| Q |
172 |
ttttgaaaaacctacatagaaatggcaccaaaacttttgaacttggcatacaatatataaactgtgtttgcattttgataagcgaacaaatctatcagtg |
271 |
Q |
| |
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|||||||||| || | ||||||| ||||| ||||||| ||||| ||| || | ||| ||| ||| || ||||||||||||| |||||||||||| ||| |
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| T |
28127171 |
ttttgaaaaatctgcctagaaattgcacctaaactttcaaacttagcacactacataaaaattgttttcacattttgataagcaaacaaatctatccgtg |
28127072 |
T |
|
| Q |
272 |
tagaaattcacatttatggaataacta |
298 |
Q |
| |
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|||| | |||||| |||||||||||| |
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| T |
28127071 |
tagatactcacatccatggaataacta |
28127045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 121 - 318
Target Start/End: Original strand, 18328648 - 18328845
Alignment:
| Q |
121 |
tttaaaaatgattacataggcaacgaaaaataaatcatatatggtatcctgttttgaaaaacctacatagaaatggcaccaaaacttttgaacttggcat |
220 |
Q |
| |
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|||||||||||||||||||| | |||||||||||||||||| |||| ||||||||||||||||||| |||||| |||||||| ||| ||||| |||| |
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| T |
18328648 |
tttaaaaatgattacataggtgagaaaaaataaatcatatatgatatcatgttttgaaaaacctacattgaaatgacaccaaaattttcaaacttagcat |
18328747 |
T |
|
| Q |
221 |
acaatatataaactgtgtttgcattttgataagcgaacaaatctatcagtgtagaaattcacatttatggaataactatttactactccctatgattt |
318 |
Q |
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|||| || |||| |||||| |||||||||| |||||||||||||||| |||||||||||||||| ||| |||||||| ||||||||||||||||||| |
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| T |
18328748 |
acaacatttaaaatgtgttcgcattttgattagcgaacaaatctatccgtgtagaaattcacatccatgaaataactacttactactccctatgattt |
18328845 |
T |
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