View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14949_low_17 (Length: 224)
Name: NF14949_low_17
Description: NF14949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14949_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 6214320 - 6214509
Alignment:
| Q |
16 |
ataatactgtagtaggttatctataagtggcttaaagttcttaattagtatatattgtaatagtgatatatattaatgtttctttacctcttttccagtg |
115 |
Q |
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| T |
6214320 |
ataataatgtagtaggttatctataagtggcttaaagttcttaattagtatatattgtaatagtgatatatattaatgtttctttacctcttttccagtg |
6214419 |
T |
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| Q |
116 |
taccatggacgccatgctgtatgtacaggtagttttaaggaatttattgaatactttgttgaggttatgggaacacgtccatctatatct |
205 |
Q |
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| T |
6214420 |
taccatggacgccatgctgtacgtacatgtagttttaaggaatttattgaatactttgttgagattatgggaacacgtccatctatatct |
6214509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 97 - 205
Target Start/End: Original strand, 6176895 - 6177003
Alignment:
| Q |
97 |
ctttacctcttttccagtgtaccatggacgccatgctgtatgtacaggtagttttaaggaatttattgaatactttgttgaggttatgggaacacgtcca |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6176895 |
ctttacctcttttccagtgtaccatggacgccatgctgtatgcacaggcagttttaaggaatttattgaatactttgttgaggttataggaacacgtcca |
6176994 |
T |
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| Q |
197 |
tctatatct |
205 |
Q |
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||||||||| |
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| T |
6176995 |
tctatatct |
6177003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 6206706 - 6206808
Alignment:
| Q |
98 |
tttacctcttttccagtgtaccatggacgccatgctgtatgtacaggtagttttaaggaatttattgaatactttgttgaggttatgggaacacgtccat |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6206706 |
tttacctcttttccagtgtaccatggacgccatgctgtatgcacaggcagttttaaggaatttattgaatactttgttgaggttatgggaacacgcccat |
6206805 |
T |
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| Q |
198 |
cta |
200 |
Q |
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||| |
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| T |
6206806 |
cta |
6206808 |
T |
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