View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14949_low_3 (Length: 444)
Name: NF14949_low_3
Description: NF14949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14949_low_3 |
 | |
|
| [»] scaffold0376 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 14 - 431
Target Start/End: Complemental strand, 20478511 - 20478094
Alignment:
| Q |
14 |
aggcggaggtgctgcaaatgatgagcgtgaaagtactttaaatcaattgttggtggagatggatggttttggaactactgctggagttgtcgtgctcgca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20478511 |
aggcggaggtgctgcaaatgatgagcgtgaaagtactttaaatcaattgttggtggagatggatggttttggacctactgctggagttgtcgtgctcgca |
20478412 |
T |
|
| Q |
114 |
ggtacaaatagacctgatgtattagacaaagccttacttagaccggggcgttttgaccgccaaataacaattgataaacccgacattaagggtcgtggcc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
20478411 |
ggtacaaatagacctgatgtattagacaaagccttacttagaccggggcgttttgaccgccaaataacaattgataaacccgacattaagggtcgtgacc |
20478312 |
T |
|
| Q |
214 |
agatatttcagatttacttgaaaaggatcaaacttgaccaggagccttcatattattcacataagcttgcatcccttactccaggatttgctggagcgga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20478311 |
agatatttcagatttacttgaaaaggatcaaacttgaccaggagccttcatattattcacataagcttgcatcccttactccaggatttgctggagcgga |
20478212 |
T |
|
| Q |
314 |
cattgctaacgtttgcaatgaagctgctctgatagctgcaagaactgaagaagcacatgtcacagaggatcattttgaggcagctattgataggatcatt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20478211 |
cattgctaacgtttgcaatgaagctgctctgatagctgcaagaactgaagaagcacatgtcacagaggatcattttgaggcagctattgataggatcatt |
20478112 |
T |
|
| Q |
414 |
ggtggtttggagaagaag |
431 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
20478111 |
ggtggtttggagaagaag |
20478094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 26 - 431
Target Start/End: Complemental strand, 38513980 - 38513575
Alignment:
| Q |
26 |
tgcaaatgatgagcgtgaaagtactttaaatcaattgttggtggagatggatggttttggaactactgctggagttgtcgtgctcgcaggtacaaataga |
125 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
38513980 |
tgcaaatgatgaacgtgaaagtactttaaatcaattgttggtggagatggatggttttggaaccactgctggagttgttgtgctggcaggtacaaataga |
38513881 |
T |
|
| Q |
126 |
cctgatgtattagacaaagccttacttagaccggggcgttttgaccgccaaataacaattgataaacccgacattaagggtcgtggccagatatttcaga |
225 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||| |||||||||||||| |
|
|
| T |
38513880 |
cctgatgtattagacaaagccctacttagaccggggcgttttgaccgccaaataacaattgataaacctgacatcaaaggtcgtgaccagatatttcaga |
38513781 |
T |
|
| Q |
226 |
tttacttgaaaaggatcaaacttgaccaggagccttcatattattcacataagcttgcatcccttactccaggatttgctggagcggacattgctaacgt |
325 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
38513780 |
tttacttgaaagggatcaaacttgaccacgagccttcatattattcacataagcttgcatcccttactccaggatttgctggagcggatattgctaatgt |
38513681 |
T |
|
| Q |
326 |
ttgcaatgaagctgctctgatagctgcaagaactgaagaagcacatgtcacagaggatcattttgaggcagctattgataggatcattggtggtttggag |
425 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||| |||||| | |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38513680 |
ttgcaatgaagctgctctgattgctgcaaggactgaagaagcacacgtcacacatgatcatttcgaggcagctattgataggatcattggtggtttggag |
38513581 |
T |
|
| Q |
426 |
aagaag |
431 |
Q |
| |
|
|||||| |
|
|
| T |
38513580 |
aagaag |
38513575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 28 - 431
Target Start/End: Original strand, 29728440 - 29728843
Alignment:
| Q |
28 |
caaatgatgagcgtgaaagtactttaaatcaattgttggtggagatggatggttttggaactactgctggagttgtcgtgctcgcaggtacaaatagacc |
127 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||| |
|
|
| T |
29728440 |
caaatgatgagcgtgatcgtactttaaatcaattgttggtggagatggatggttttggaaccactgctggagttgttgtgcttgcaggtacgaatagacc |
29728539 |
T |
|
| Q |
128 |
tgatgtattagacaaagccttacttagaccggggcgttttgaccgccaaataacaattgataaacccgacattaagggtcgtggccagatatttcagatt |
227 |
Q |
| |
|
|||| ||||||| ||||| | || || || |||||||| || |||||||||||| |||||||||||||||| || ||||||| |||||||||||||||| |
|
|
| T |
29728540 |
tgatatattagataaagctctgctcaggcctgggcgtttcgatcgccaaataacagttgataaacccgacatcaaaggtcgtgaccagatatttcagatt |
29728639 |
T |
|
| Q |
228 |
tacttgaaaaggatcaaacttgaccaggagccttcatattattcacataagcttgcatcccttactccaggatttgctggagcggacattgctaacgttt |
327 |
Q |
| |
|
|||||||| | |||||||||| ||| || |||| |||| |||| | | ||||||||||||||||| ||||||| ||||||| || ||| |||| |||| |
|
|
| T |
29728640 |
tacttgaacaagatcaaactttcccacgaacctttgtatttttcaaaaaggcttgcatcccttactcaaggatttactggagcagatatttctaatgttt |
29728739 |
T |
|
| Q |
328 |
gcaatgaagctgctctgatagctgcaagaactgaagaagcacatgtcacagaggatcattttgaggcagctattgataggatcattggtggtttggagaa |
427 |
Q |
| |
|
|||||||||||||||| || ||||| || |||||||||||||| |||||| ||||||||| ||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
29728740 |
gcaatgaagctgctctaattgctgcgaggactgaagaagcacaagtcacaatggatcatttcgaggcagctattgatagaatcattggcggtttagagaa |
29728839 |
T |
|
| Q |
428 |
gaag |
431 |
Q |
| |
|
|||| |
|
|
| T |
29728840 |
gaag |
29728843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 28 - 431
Target Start/End: Original strand, 24004037 - 24004440
Alignment:
| Q |
28 |
caaatgatgagcgtgaaagtactttaaatcaattgttggtggagatggatggttttggaactactgctggagttgtcgtgctcgcaggtacaaatagacc |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| | |
|
|
| T |
24004037 |
caaatgatgagcgtgaaagtactttaaatcaattgttggtggaaatggatggttttggaaccactgctggagttgttgtgcttgcaggtacaaatagagc |
24004136 |
T |
|
| Q |
128 |
tgatgtattagacaaagccttacttagaccggggcgttttgaccgccaaataacaattgataaacccgacattaagggtcgtggccagatatttcagatt |
227 |
Q |
| |
|
|||| |||||||||| ||||||||||| || ||||||||||||||| ||| |||||||| |||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
24004137 |
tgatatattagacaacgccttacttaggcctgggcgttttgaccgcacgatatcaattgatgtacccgacattaaaggtcgtgaccagatatttcagatt |
24004236 |
T |
|
| Q |
228 |
tacttgaaaaggatcaaacttgaccaggagccttcatattattcacataagcttgcatcccttactccaggatttgctggagcggacattgctaacgttt |
327 |
Q |
| |
|
|| ||||||| |||||||||||||| ||||||||||||||||| || | ||||||| ||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
24004237 |
tatttgaaaaaaatcaaacttgaccacgagccttcatattattctcagaggcttgcagcccttactccaggatttgctggagcagacattgctaatgttt |
24004336 |
T |
|
| Q |
328 |
gcaatgaagctgctctgatagctgcaagaactgaagaagcacatgtcacagaggatcattttgaggcagctattgataggatcattggtggtttggagaa |
427 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| ||| | || |||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24004337 |
gcaatgaagctgctctgattgctgcaaggactgatgaatcgcaagtcacaatggatcatttcgaggcagctatcgataggatcattggtggtttggagaa |
24004436 |
T |
|
| Q |
428 |
gaag |
431 |
Q |
| |
|
|||| |
|
|
| T |
24004437 |
gaag |
24004440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 36 - 431
Target Start/End: Original strand, 2971 - 3366
Alignment:
| Q |
36 |
gagcgtgaaagtactttaaatcaattgttggtggagatggatggttttggaactactgctggagttgtcgtgctcgcaggtacaaatagacctgatgtat |
135 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| ||||| || |||||||||||| ||||||||| |
|
|
| T |
2971 |
gagcgtgaaaatactttaaatcaattgttggtggagatggatggatttggaaccacttctggagttgttgtgctagctggtacaaatagagctgatgtat |
3070 |
T |
|
| Q |
136 |
tagacaaagccttacttagaccggggcgttttgaccgccaaataacaattgataaacccgacattaagggtcgtggccagatatttcagatttacttgaa |
235 |
Q |
| |
|
||||||||||| || ||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||| | ||||||||||| ||||||||||| |
|
|
| T |
3071 |
tagacaaagccctagttagaccagggcgttttgaccgccaaataacaattgacaaacccgacatcaaaggtcgcgatcagatatttcaaatttacttgaa |
3170 |
T |
|
| Q |
236 |
aaggatcaaacttgaccaggagccttcatattattcacataagcttgcatcccttactccaggatttgctggagcggacattgctaacgtttgcaatgaa |
335 |
Q |
| |
|
|| |||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||| |||||||| |||||||||||| |
|
|
| T |
3171 |
cagaatcaaacttgacaatgagccttcatattattcacatagacttgcatcccttactccaggattttctggagtggagattgctaatgtttgcaatgaa |
3270 |
T |
|
| Q |
336 |
gctgctctgatagctgcaagaactgaagaagcacatgtcacagaggatcattttgaggcagctattgataggatcattggtggtttggagaagaag |
431 |
Q |
| |
|
||||||||||| |||||||| ||||| |||| ||||||||| |||||||||| |||||||| ||||||||| ||||||| ||||| ||||||||| |
|
|
| T |
3271 |
gctgctctgattgctgcaaggactgatgaagaacatgtcacgaaggatcatttcgaggcagccattgatagggtcattggcggtttagagaagaag |
3366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 28 - 431
Target Start/End: Original strand, 16837915 - 16838318
Alignment:
| Q |
28 |
caaatgatgagcgtgaaagtactttaaatcaattgttggtggagatggatggttttggaactactgctggagttgtcgtgctcgcaggtacaaatagacc |
127 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||| |
|
|
| T |
16837915 |
caaatgatgagcgtgaacgtactttaaatcaattgttggtggagatggatggttttggaaccactgctggagttgttgtgcttgcaggtacgaatagacc |
16838014 |
T |
|
| Q |
128 |
tgatgtattagacaaagccttacttagaccggggcgttttgaccgccaaataacaattgataaacccgacattaagggtcgtggccagatatttcagatt |
227 |
Q |
| |
|
|||| ||||||| ||||| | || || | |||||||| || |||||||||||| ||||||||||||||| || ||||||| |||||||||||||||| |
|
|
| T |
16838015 |
tgatatattagataaagctctgctcaggcatgggcgtttcgatcgccaaataacagctgataaacccgacatcaaaggtcgtgaccagatatttcagatt |
16838114 |
T |
|
| Q |
228 |
tacttgaaaaggatcaaacttgaccaggagccttcatattattcacataagcttgcatcccttactccaggatttgctggagcggacattgctaacgttt |
327 |
Q |
| |
|
|||||||| | |||||||||| ||| || |||| |||| |||| | | ||||||||||||||||| ||||||| ||||||| || |||||||| |||| |
|
|
| T |
16838115 |
tacttgaacaagatcaaactttcccacgaacctttgtatttttcaaaaaggcttgcatcccttactcaaggatttactggagcagagattgctaatgttt |
16838214 |
T |
|
| Q |
328 |
gcaatgaagctgctctgatagctgcaagaactgaagaagcacatgtcacagaggatcattttgaggcagctattgataggatcattggtggtttggagaa |
427 |
Q |
| |
|
| |||||||||||||| || ||||| || |||||||||||||| |||||| ||||||||| ||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
16838215 |
gtaatgaagctgctctaattgctgcgaggactgaagaagcacaagtcacaatggatcatttcgaggcagctattgatagaatcattggcggtttagagaa |
16838314 |
T |
|
| Q |
428 |
gaag |
431 |
Q |
| |
|
|||| |
|
|
| T |
16838315 |
gaag |
16838318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 4e-88; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 223 - 431
Target Start/End: Original strand, 45284926 - 45285134
Alignment:
| Q |
223 |
agatttacttgaaaaggatcaaacttgaccaggagccttcatattattcacataagcttgcatcccttactccaggatttgctggagcggacattgctaa |
322 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| |
|
|
| T |
45284926 |
agatttacttgaaaaggattaaacttgaccaggagccttcatattattcacataagcttgcatcccttactccatgatttgctggatcagacattgctaa |
45285025 |
T |
|
| Q |
323 |
cgtttgcaatgaagctgctctgatagctgcaagaactgaagaagcacatgtcacagaggatcattttgaggcagctattgataggatcattggtggtttg |
422 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||| |||||| |||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45285026 |
tgtttgcaatgaagctgctctgattgctgcaagtactgaagaaacacatgccacaaaggatcattttgaggcagctattgataggatcatcggtggtttg |
45285125 |
T |
|
| Q |
423 |
gagaagaag |
431 |
Q |
| |
|
||||||||| |
|
|
| T |
45285126 |
gagaagaag |
45285134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 92 - 183
Target Start/End: Original strand, 45284835 - 45284926
Alignment:
| Q |
92 |
tgctggagttgtcgtgctcgcaggtacaaatagacctgatgtattagacaaagccttacttagaccggggcgttttgaccgccaaataacaa |
183 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
45284835 |
tgctggagttgttgtgctggcaggtaccaatagacctgatgtattagacaaagccctacttaggccggggcgttttgacctccaaataacaa |
45284926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 45284797 - 45284842
Alignment:
| Q |
26 |
tgcaaatgatgagcgtgaaagtactttaaatcaattgttggtggag |
71 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
45284797 |
tgcaaatgatgagggtgaaagtactttaaatcaattgttgctggag |
45284842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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