View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14949_low_5 (Length: 414)
Name: NF14949_low_5
Description: NF14949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14949_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 110 - 401
Target Start/End: Original strand, 10193160 - 10193451
Alignment:
| Q |
110 |
acacggattggaaatttgacagaatatttaccaagcctaccggccatgtcagcacgctaaagtcaacactccaacagtttggaatcatattaactaagct |
209 |
Q |
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| T |
10193160 |
acacggattggaaatttgacagaatatttaccaagcctaccggccatgtcagcacgctaaagtcaacactccaacagtttggaatcatattaactaagct |
10193259 |
T |
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| Q |
210 |
tattccactaacttgatcagttagttaagtacaccctcagtggtgtagaccacacatagcttaccaaaaaccatgtaactaaaaattgacttgttaagta |
309 |
Q |
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| T |
10193260 |
tattccactaacttgatcagttagttaagtacaccctcagtggtgtagaccacacatagcttaccaaaagccatgtaactaaaaattgacttgttaagta |
10193359 |
T |
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| Q |
310 |
cacgaagcttgtgtgcagcttaactggtcaaccctaaaaattgacttttaaggtgaagattgtccaagcttcctatgccctgtttagttcat |
401 |
Q |
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| T |
10193360 |
catgaagcttgtgtgcagcttaactggtcaaccctaaaaattgacttgtaaggtgaagattgtccaagcttcctatgccctgtttagttcat |
10193451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 10192886 - 10192965
Alignment:
| Q |
32 |
agctagagcaaaatgaaggagttgaattctttgaatgagaaaatggtgaagttggccattcaaagcatagtagggcttac |
111 |
Q |
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| T |
10192886 |
agctagagcaaaatgaaggagttgagttctttgaatgagaaaatggtgaagttggccattcaaagcatagtagggcttac |
10192965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 333 - 401
Target Start/End: Complemental strand, 19459820 - 19459752
Alignment:
| Q |
333 |
ctggtcaaccctaaaaattgacttttaaggtgaagattgtccaagcttcctatgccctgtttagttcat |
401 |
Q |
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| T |
19459820 |
ctggtcaaccctaaaaattgacttgtaaggtgaagattgtccaagcttcctatgctctgtttaggtcat |
19459752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 19460668 - 19460615
Alignment:
| Q |
58 |
ttctttgaatgagaaaatggtgaagttggccattcaaagcatagtagggcttac |
111 |
Q |
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| T |
19460668 |
ttctttgaatgagagaatggtgaagttagacattcaaagcatggtagggcttac |
19460615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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