View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14949_low_7 (Length: 401)
Name: NF14949_low_7
Description: NF14949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14949_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 16 - 396
Target Start/End: Complemental strand, 4948118 - 4947714
Alignment:
| Q |
16 |
gtttcatgtacttggtagcatctcccaacacagaagctttgtccatctgcacataccataatattgaatacattaattcaatgcttagtacaatataaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4948118 |
gtttcatgtacttggtagcatctcccaacacagaagctttgtccatctgcacataccataatattgaatacattaattcaatgcttagtacaatataaat |
4948019 |
T |
|
| Q |
116 |
attgcaattgatattcaggtttaacttatctaggttaagcttgcatgtgtgtgtttattcactaattagtaaaattagttgcacccagtgtaagtagaac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4948018 |
attgcaattgatattcaggtttaacttatctaggttaagcttgcatgtgtgtgtttattcactaattagtaaaattagttgcacccagtgtaagtagaac |
4947919 |
T |
|
| Q |
216 |
atta-------------ctcacaactataaaatttaaattatnnnnnnnnttagatacc-----------taatttgatcatagaaaatgatcaataaaa |
291 |
Q |
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|||| ||||||||||||||||||||||||| || ||| || |||||||||||||||||||||||||||||| |
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| T |
4947918 |
attactcacaaacattactcacaactataaaatttaaattataaattttttttgatcccgagttgatccctaatttgatcatagaaaatgatcaataaaa |
4947819 |
T |
|
| Q |
292 |
acaatttttagtttctgagtaaagaaaatggaacaatttaatcccgagnnnnnnnatgtctactctttgggtccgagaaataaaagctgtcctatttctt |
391 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4947818 |
acaatttttagtttctgagaaaagaaaatggaacaatttaatccctagtttttttatgtctattctttgggtccgagaaataaaagctgtcctatttctt |
4947719 |
T |
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| Q |
392 |
ttctc |
396 |
Q |
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||||| |
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| T |
4947718 |
ttctc |
4947714 |
T |
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