View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1494_high_10 (Length: 301)
Name: NF1494_high_10
Description: NF1494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1494_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 8e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 53278294 - 53278119
Alignment:
| Q |
13 |
tgaaatggcacacacccaattgggggaatgcttaatactcctatcctccttgcacccagttgatatatttccttttaattgaatttagacaaaatataaa |
112 |
Q |
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| T |
53278294 |
tgaaatggcacacacccaattgggggaatgcttaatactcctatcctccttgcacccagttgatatatttccttttaattgaatttagacaaaatataaa |
53278195 |
T |
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| Q |
113 |
caaacatgagtacatgcacttacacattctttaactcctggatgaggtcattcaaatatcagagtattcaatatat |
188 |
Q |
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| T |
53278194 |
caaacatgagtacatgcacttacacattctttaactcctggatgaggtcattcaaatatcagagtattcaatatat |
53278119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 53278054 - 53278022
Alignment:
| Q |
254 |
cctctcgccaccttttcaaatatatgaatcttt |
286 |
Q |
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| T |
53278054 |
cctctcaccaccttttcaaatatatgaatcttt |
53278022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 8254152 - 8254078
Alignment:
| Q |
13 |
tgaaatggcacacacccaattgggggaatgcttaatactcctatcctccttgcacccagttgatatatttccttt |
87 |
Q |
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| T |
8254152 |
tgaaacggcacgcacccaattggtggtacattgaatactcctatcctccttgcacctagttgatacatttccttt |
8254078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 8244547 - 8244506
Alignment:
| Q |
46 |
aatactcctatcctccttgcacccagttgatatatttccttt |
87 |
Q |
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| T |
8244547 |
aatactcctatcctccttgcacctagttgatacatttccttt |
8244506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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