View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1494_high_15 (Length: 253)
Name: NF1494_high_15
Description: NF1494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1494_high_15 |
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| [»] scaffold0137 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 3896743 - 3896961
Alignment:
| Q |
19 |
attttaccatgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctcccaatttgagctc |
118 |
Q |
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| T |
3896743 |
attttaccatgtcatcaaaagtccagaggatgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctcccaatttgagctc |
3896842 |
T |
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| Q |
119 |
attacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgattcagtacatgtacaagccaaacatgaacagaaaagagagacacataaagcatt |
218 |
Q |
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| T |
3896843 |
attacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgattcagtacatgtacaagccaaacatgaacagaaaagagagacacataaagcatt |
3896942 |
T |
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| Q |
219 |
tgataagaataggcctttg |
237 |
Q |
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||||||||||||| ||||| |
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| T |
3896943 |
tgataagaataggtctttg |
3896961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 170
Target Start/End: Complemental strand, 46285180 - 46285038
Alignment:
| Q |
31 |
catcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctcccaatttg---agctcattacgtgc |
127 |
Q |
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||||| ||||||| ||||||| ||||| ||||||||||||||| || ||||||||||||||| |||| ||||||||| || || ||| | ||| |
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| T |
46285180 |
catcagaagtccaaagggtgaggttgtctctcaaaagttgcattataagtgtgctgtctttgtaggattcttctcccaatgtgtccagttcagcaattgc |
46285081 |
T |
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| Q |
128 |
ttcatctaaagcctatcaacaaggaaaagaaaattgattcagt |
170 |
Q |
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| T |
46285080 |
ttcctcaaaagcctatccagaaggaaaagaatattgtttcagt |
46285038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 4397 - 4615
Alignment:
| Q |
19 |
attttaccatgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctcccaatttgagctc |
118 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4397 |
attttaccgtgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctcccaatttgagctc |
4496 |
T |
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| Q |
119 |
attacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgattcagtacatgtacaagccaaacatgaacagaaaagagagacacataaagcatt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4497 |
attacgtgcttcatctaaagcctatcaacaaggaaaataaaattgattcagtacaagtacaagccaaacatgaacagaaaagagagacacataaagcatt |
4596 |
T |
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| Q |
219 |
tgataagaataggcctttg |
237 |
Q |
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||||||||||||||||||| |
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| T |
4597 |
tgataagaataggcctttg |
4615 |
T |
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