View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1494_high_19 (Length: 237)
Name: NF1494_high_19
Description: NF1494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1494_high_19 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 971622 - 971840
Alignment:
| Q |
15 |
aataatatctgaatcagaaacatacaagacaattattatcatccaatttccatcaaaagcacttccaaggaattatataattttagaaacatacacgaca |
114 |
Q |
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| T |
971622 |
aataatatctgaatcagaaacatacaagacaattat---catccaatttccatcaaaagcacttccaaggaattatataattttagaaacatacaagaca |
971718 |
T |
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| Q |
115 |
attttagtggttggatggtggcacttaaagtcctactaagccatatttcttttgccattggatgcatatctaacaaaccttaaaccaaatccttcttgta |
214 |
Q |
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| T |
971719 |
-ttttagtggttggatggtggcacttaaagccctactaagccatatttcttttgccattggatgcatatctaacaaaccttaaaccaaatccttcttgta |
971817 |
T |
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| Q |
215 |
tgactttctctgaagcctccagc |
237 |
Q |
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| T |
971818 |
tgactttctctgaagcctccagc |
971840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 1028787 - 1028843
Alignment:
| Q |
181 |
tatctaacaaaccttaaaccaaatccttcttgtatgactttctctgaagcctccagc |
237 |
Q |
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| T |
1028787 |
tatctaacaaaccttaaacaaatgccttcttgtatgactttctctgaagcctccagc |
1028843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 1008971 - 1009049
Alignment:
| Q |
158 |
tatttcttttgccattggatgcatatctaacaaaccttaaaccaaatccttcttgtatgactttctctgaagcctccagc |
237 |
Q |
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| T |
1008971 |
tatttctttaaccattggatgcatatctgaaaaaccttaaacgca-tccttcttgtatgactttatctgacgcctccagc |
1009049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 1011482 - 1011538
Alignment:
| Q |
181 |
tatctaacaaaccttaaaccaaatccttcttgtatgactttctctgaagcctccagc |
237 |
Q |
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| T |
1011482 |
tatctaacaaaccttaaacaagtgccttcttgtatgactttctctgaagtctccagc |
1011538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 1024613 - 1024679
Alignment:
| Q |
169 |
ccattggatgcatatctaacaaaccttaaaccaaatccttcttgtatgactttctctgaagcctccagc |
237 |
Q |
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| T |
1024613 |
ccattggatgcatatctgacaaactttaa--cacatccttcttgtatgactttatctgacgtctccagc |
1024679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 22670527 - 22670473
Alignment:
| Q |
181 |
tatctaacaaaccttaaaccaaatccttcttgtatgactttctctgaagcctcca |
235 |
Q |
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| T |
22670527 |
tatctaacaaaccttaaacacatgccttcttgaatgactttctctgaagcctcca |
22670473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 22670629 - 22670529
Alignment:
| Q |
20 |
tatctgaatcagaaacatacaagacaattattatcatccaatttccatcaaaagcacttccaaggaattatataattttagaaacatacacgacaatttt |
119 |
Q |
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| T |
22670629 |
tatctaaatcagaaacttacaagacaattttt---attcaatttccaacaaaagcacttccaaataat--cataattttagaaacatagtagaaaatttt |
22670535 |
T |
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| Q |
120 |
agtggt |
125 |
Q |
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|||||| |
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| T |
22670534 |
agtggt |
22670529 |
T |
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