View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1494_high_4 (Length: 400)
Name: NF1494_high_4
Description: NF1494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1494_high_4 |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 386
Target Start/End: Original strand, 31033688 - 31034071
Alignment:
| Q |
18 |
aaaacaattccaggtcctccacaacaaaaccagaatcaaaatacacttcggtgaagactaagcagctgactgactacacaaggatcacacacaaa----- |
112 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31033688 |
aaaacaattccaggtcctccacaacaaaacgagaatcaaaatacacttcggtgaagactaagcagctgactgactacacaaggatcacacaccaacacta |
31033787 |
T |
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| Q |
113 |
----------aaaccctcaacacattgcatttcctacctcccatttcagaagtaatgatttttaccatccctgactagaatgccagcctgaagcagatat |
202 |
Q |
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| T |
31033788 |
aacactccaaaaaccctcaacacattgcatttcctacctcccatttcagaagtaatgatttttaccatccctgactagaatgccagcctgaagcagatat |
31033887 |
T |
|
| Q |
203 |
gagatttctacaccagatctccccttatcttctgacttgacgccaactcctaaaaaaggtagagggttagtccacgactttgatattgaatatccaaacc |
302 |
Q |
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| T |
31033888 |
gagatttctacaccagatctcccctaatcttctgacttgacgccaactcctaaaaaaggtaaagggttagtccacgacttcgatattgaatatccaaacc |
31033987 |
T |
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| Q |
303 |
ctgatgattatgaccttatccagtttcaggaaagcatttaccttttccgaaatagtatcggttgaaacacttttatcctgaatt |
386 |
Q |
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| T |
31033988 |
ctgatgattatgaccttatccagtttcaggaaagcatttaccttttccgaaatagtatcggttgaaacacttttatcctgaatt |
31034071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 119 - 296
Target Start/End: Complemental strand, 31098170 - 31097993
Alignment:
| Q |
119 |
tcaacacattgcatttcctacctcccatttcagaagtaatgatttttaccatccctgactagaatgccagcctgaagcagatatgagatttctacaccag |
218 |
Q |
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|||| |||||||||| ||| ||||||| |||||||||||||||||| || ||||||||||| ||||||||||||| |||||| ||||| | ||||| | |
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| T |
31098170 |
tcaagacattgcattgccttcctcccacttcagaagtaatgattttaactatccctgactacaatgccagcctgagtcagatacgagatatttacacaaa |
31098071 |
T |
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| Q |
219 |
atctccccttatcttctgacttgacgccaactcctaaaaaaggtagagggttagtccacgactttgatattgaatatc |
296 |
Q |
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| T |
31098070 |
acctcccctagtcttctgactcgatgccaagtcctaaacaaactaaaggtttagtccaccactgcgatattgtatatc |
31097993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 341
Target Start/End: Complemental strand, 31093302 - 31093211
Alignment:
| Q |
250 |
tcctaaaaaaggtagagggttagtccacgactttgatattgaatatccaaaccctgatgattatgaccttatccagtttcaggaaagcattt |
341 |
Q |
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| T |
31093302 |
tcctaaacaagctagagggttagtccactaatgtgatattgcatatccatatcccaatgattttgatctcatccagttccgggaaagcattt |
31093211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 393
Target Start/End: Complemental strand, 31315 - 30925
Alignment:
| Q |
18 |
aaaacaattccaggtcctccacaacaaaaccagaatcaaaatacacttcggtgaagactaagcagctgactgactacacaaggatcacacacaaa----- |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31315 |
aaaacaattccaggtcctccacaacaaaaccagaatcaaaatacacttcggtgaagactaagcagctgactgactacacaaggatcacacaccaacacta |
31216 |
T |
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| Q |
113 |
----------aaaccctcaacacattgcatttcctacctcccatttcagaagtaatgatttttaccatccctgactagaatgccagcctgaagcagatat |
202 |
Q |
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| T |
31215 |
aacactccaaaaaccctcaacacattgcatttcctacctcccatttcagaagtaatgatttttaccatccctgactagaatgccagcctgaagcagaaat |
31116 |
T |
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| Q |
203 |
gagatttctacaccagatctccccttatcttctgacttgacgccaactcctaaaaaaggtagagggttagtccacgactttgatattgaatatccaaacc |
302 |
Q |
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| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
31115 |
gggatttctacaccagatctcccctaatcttctgacttgacgccaactcctaaaaaaggtagagggttagtccacaactttgatattgcatatccaaacc |
31016 |
T |
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| Q |
303 |
ctgatgattatgaccttatccagtttcaggaaagcatttaccttttccgaaatagtatcggttgaaacacttttatcctgaattttcttcg |
393 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||| |||||||||||||||| |||| |
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| T |
31015 |
tcgatgattttgaccttatccagtttcaggaaagcacttaccttttctgaaatagtatcggtcgaaacatttttatcctgaatttttttcg |
30925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 393
Target Start/End: Complemental strand, 1964 - 1889
Alignment:
| Q |
320 |
atccagtttcaggaaagcattt--accttttccgaaatagtatcggttgaaacacttttatcctgaattttcttcg |
393 |
Q |
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|||| ||| ||||||||||||| |||| ||| ||||||||||| || ||||||||| |||| |||||||| |||| |
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| T |
1964 |
atccggttccaggaaagcattttaacctgttctgaaatagtatcagtcgaaacacttatatcgtgaatttttttcg |
1889 |
T |
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