View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1494_high_5 (Length: 390)
Name: NF1494_high_5
Description: NF1494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1494_high_5 |
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| [»] scaffold0003 (1 HSPs) |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 24027823 - 24028196
Alignment:
| Q |
1 |
aacatcttttggtaaatataaaccaacccaatcaagactttgaccttgtgatttgttgattgtcattgagtatgaaacaacaattgggaattgtcttcga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24027823 |
aacatcttttggtaaatataaaccaacccaatcaagactttgaccttgtgatttgttgattgtcattgagtatgaaacaacaattgggaattgtcttcga |
24027922 |
T |
|
| Q |
101 |
cacaatttgaaaggccatggagactgaacttgtgttattagatagtagatcttcctcagaagtatattgtgtaccagaaagtgactgcgtacaggtcagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24027923 |
cacaatttgaaaggccatggagactgaacttgtgttattagatagtagatcttcctcagaagtatattgtgtaccagaaagtgactgcgtacaggtcagc |
24028022 |
T |
|
| Q |
201 |
tggctttgagactgaacttgttcgtatttaggtaagctggattagtaattaaaagcatcattagtgatgaagtggtgcatgacatgtaatacctagtggg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24028023 |
tggctttgagactgaacttgttcgtatttaggtaagctggattagtaattaaaagcatcattagtgatgaagtggtgcatgacatgtaatacctagtggg |
24028122 |
T |
|
| Q |
301 |
aaatgcacaaaaagtggtaaatatagcaacctagctctgaattgattgatctctggaatgtcagcattgatgaa |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24028123 |
aaatgcacaaaaagtggtaaatatagcaacctagctctgaattgattgatctctggaatgtcagcattgatgaa |
24028196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 41860339 - 41860282
Alignment:
| Q |
41 |
tgaccttgtgatttgttgattgtcattgagtatgaaacaacaattgggaattgtcttc |
98 |
Q |
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| T |
41860339 |
tgaccttgagatttgttgattgtcatagcatatgagacaacaattgggaattgtcttc |
41860282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 41888240 - 41888183
Alignment:
| Q |
41 |
tgaccttgtgatttgttgattgtcattgagtatgaaacaacaattgggaattgtcttc |
98 |
Q |
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|||||||| ||||||||||||||||| | ||||| |||||||||||||||||||||| |
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| T |
41888240 |
tgaccttgagatttgttgattgtcatagcatatgagacaacaattgggaattgtcttc |
41888183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 41879210 - 41879153
Alignment:
| Q |
41 |
tgaccttgtgatttgttgattgtcattgagtatgaaacaacaattgggaattgtcttc |
98 |
Q |
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| T |
41879210 |
tgaccttgagatttgttgattgtcatagcatatgagaaaacaattgggaattgtcttc |
41879153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 149128 - 149249
Alignment:
| Q |
2 |
acatcttttggtaaatataaaccaacccaatcaagactttgaccttgtgatttgttgattgtcattgagtatgaaacaacaattgggaattgtcttcgac |
101 |
Q |
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|||||| |||||||||||| |||||||||||||||| || ||||| |||||||| |||||||||| ||||| |||| |||||||| ||||| | | |
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| T |
149128 |
acatctcttggtaaatatagaccaacccaatcaagagactgcccttgagatttgttaattgtcattgcatatgacacaattattgggaactgtctcctag |
149227 |
T |
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| Q |
102 |
acaatttgaaaggccatggaga |
123 |
Q |
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| T |
149228 |
ataatttgaatggccatggaga |
149249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 22060899 - 22060984
Alignment:
| Q |
41 |
tgaccttgtgatttgttgattgtcattgagtatgaaacaacaattgggaattgtcttcgacacaatttgaaaggccatggagactg |
126 |
Q |
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| T |
22060899 |
tgaccttgtgatttgttaatggtcattgcataggaaacaataatgggaaattgcctcctaatcaatttaaaaggccatggagactg |
22060984 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 122478 - 122533
Alignment:
| Q |
42 |
gaccttgtgatttgttgattgtcattgagtatgaaacaacaattgggaattgtctt |
97 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
122478 |
gaccttgtgatttgttgattgtcattgagtatgagacaacaattgaaaattgtctt |
122533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 22069913 - 22070034
Alignment:
| Q |
2 |
acatcttttggtaaatataaaccaacccaatcaagactttgaccttgtgatttgttgattgtcattgagtatgaaacaacaattgggaattgtcttcgac |
101 |
Q |
| |
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|||||||| |||||||| | ||||||||||||||| ||||||||||||||| ||||| |||||| | || ||| |||||| || |||||||| | | |
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| T |
22069913 |
acatctttaggtaaataaagtccaacccaatcaagagattgaccttgtgatttattgatagtcatttaataagaacaaacaataggaaattgtctcctag |
22070012 |
T |
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| Q |
102 |
acaatttgaaaggccatggaga |
123 |
Q |
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| |||||||| ||||||||||| |
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| T |
22070013 |
ataatttgaatggccatggaga |
22070034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 114016 - 114101
Alignment:
| Q |
41 |
tgaccttgtgatttgttgattgtcattgagtatgaaacaacaattgggaattgtcttcgacacaatttgaaaggccatggagactg |
126 |
Q |
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||||||||||| ||||| || ||||||| || ||||||| ||| || |||||||| | | |||||| ||||||||||||||||| |
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| T |
114016 |
tgaccttgtgacttgttaatggtcattgcataagaaacaataataggaaattgtctcctaatcaatttaaaaggccatggagactg |
114101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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