View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1494_high_6 (Length: 390)

Name: NF1494_high_6
Description: NF1494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1494_high_6
NF1494_high_6
[»] chr2 (4 HSPs)
chr2 (37-132)||(9423250-9423345)
chr2 (240-310)||(32682178-32682248)
chr2 (242-307)||(11994665-11994730)
chr2 (242-307)||(12248199-12248264)
[»] chr4 (2 HSPs)
chr4 (235-310)||(11117896-11117971)
chr4 (99-153)||(11117705-11117759)
[»] chr6 (3 HSPs)
chr6 (235-307)||(25523299-25523371)
chr6 (234-310)||(24140582-24140658)
chr6 (42-91)||(25523591-25523642)
[»] chr5 (13 HSPs)
chr5 (235-310)||(41713820-41713895)
chr5 (99-202)||(34233218-34233321)
chr5 (99-202)||(34240991-34241094)
chr5 (235-310)||(42123233-42123308)
chr5 (235-307)||(42117485-42117557)
chr5 (244-310)||(41444107-41444173)
chr5 (242-307)||(42128634-42128699)
chr5 (99-190)||(41572456-41572547)
chr5 (99-190)||(41618095-41618186)
chr5 (40-91)||(42128354-42128407)
chr5 (101-153)||(42128438-42128490)
chr5 (40-91)||(41572576-41572629)
chr5 (40-91)||(41618215-41618268)
[»] chr3 (2 HSPs)
chr3 (235-307)||(8522856-8522928)
chr3 (99-171)||(8522665-8522737)


Alignment Details
Target: chr2 (Bit Score: 84; Significance: 8e-40; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 9423345 - 9423250
Alignment:
Q  37 tttaggtccacatttcattgacaagggaaatccataaccccaagtttccttcataaaaataatttccttgaggtatttctccaactagatgattat 132  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9423345 tttaggtccacatttcatttacaagggaaatccataacccccagtttccttcataaaaatcatttccttgaggtatttctccaactagatgattat 9423250  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 310
Target Start/End: Complemental strand, 32682248 - 32682178
Alignment:
Q  240 tgagtgcatgaagctctccaataacattttgaatctccccttcaaatttatttcttgacaaatcaatactt 310  Q
    |||||||||||||||| |||||| ||||| ||||||| ||||||||| | |||||||||||||||||||||    
T  32682248 tgagtgcatgaagctccccaatagcatttggaatctctccttcaaatctgtttcttgacaaatcaatactt 32682178  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 11994730 - 11994665
Alignment:
Q  242 agtgcatgaagctctccaataacattttgaatctccccttcaaatttatttcttgacaaatcaata 307  Q
    ||||| ||||||||  ||||||||||| ||||||| ||||||||||| ||||||||||||||||||    
T  11994730 agtgcttgaagctcatcaataacatttggaatctctccttcaaatttgtttcttgacaaatcaata 11994665  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 12248199 - 12248264
Alignment:
Q  242 agtgcatgaagctctccaataacattttgaatctccccttcaaatttatttcttgacaaatcaata 307  Q
    ||||| ||||||||  ||||||||||| ||||||| ||||||||||| ||||||||||||||||||    
T  12248199 agtgcttgaagctcatcaataacatttggaatctctccttcaaatttgtttcttgacaaatcaata 12248264  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 11117896 - 11117971
Alignment:
Q  235 ccctttgagtgcatgaagctctccaataacattttgaatctccccttcaaatttatttcttgacaaatcaatactt 310  Q
    |||||||||||||||||||||||||||| |||||  |||||| ||||||||||| |||||||||||||||||||||    
T  11117896 ccctttgagtgcatgaagctctccaatagcatttgtaatctctccttcaaatttgtttcttgacaaatcaatactt 11117971  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 11117705 - 11117759
Alignment:
Q  99 tttccttgaggtatttctccaactagatgattatgggaaagatttaagacttcaa 153  Q
    |||||||||||||||||||| |||||||| ||||  |||| || |||||||||||    
T  11117705 tttccttgaggtatttctcccactagatggttatttgaaatatctaagacttcaa 11117759  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 235 - 307
Target Start/End: Complemental strand, 25523371 - 25523299
Alignment:
Q  235 ccctttgagtgcatgaagctctccaataacattttgaatctccccttcaaatttatttcttgacaaatcaata 307  Q
    |||||||||||||||||||||||||||| ||||| ||||||| ||||||||||| |||||||| |||||||||    
T  25523371 ccctttgagtgcatgaagctctccaatagcatttggaatctctccttcaaatttgtttcttgaaaaatcaata 25523299  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 24140582 - 24140658
Alignment:
Q  234 tccctttgagtgcatgaagctctccaataacattttgaatctccccttcaaatttatttcttgacaaatcaatactt 310  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||| ||||||||||| |||||||||| ||| ||||||    
T  24140582 tccctttgagtgcatgaagctctccgatagcatttggaatctctccttcaaatttgtttcttgacatatcgatactt 24140658  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 25523642 - 25523591
Alignment:
Q  42 gtccacatttcattgacaagggaaatcca--taaccccaagtttccttcata 91  Q
    |||||||| || |||||||||||||||||  |||||||||||||||||||||    
T  25523642 gtccacatctctttgacaagggaaatccacataaccccaagtttccttcata 25523591  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 41713895 - 41713820
Alignment:
Q  235 ccctttgagtgcatgaagctctccaataacattttgaatctccccttcaaatttatttcttgacaaatcaatactt 310  Q
    |||||||||  ||||||||||||||||||||| | |||||||||| ||||||||||||||||| ||||||||||||    
T  41713895 ccctttgagatcatgaagctctccaataacatctggaatctccccatcaaatttatttcttgaaaaatcaatactt 41713820  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 202
Target Start/End: Complemental strand, 34233321 - 34233218
Alignment:
Q  99 tttccttgaggtatttctccaactagatgattatgggaaagatttaagacttcaaaactgttcaggttggttagttctgcagaaatcacaccggcgagca 198  Q
    |||||||||||||||||||| || ||||| |||| ||||||||  |||||||||| ||||||||  ||||||| |||||||| ||||| ||| | |||||    
T  34233321 tttccttgaggtatttctcccacaagatggttattggaaagatccaagacttcaagactgttcaaattggttaattctgcaggaatcataccagtgagca 34233222  T
Q  199 tatt 202  Q
    ||||    
T  34233221 tatt 34233218  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 202
Target Start/End: Complemental strand, 34241094 - 34240991
Alignment:
Q  99 tttccttgaggtatttctccaactagatgattatgggaaagatttaagacttcaaaactgttcaggttggttagttctgcagaaatcacaccggcgagca 198  Q
    |||||||||||||||||||| || ||||| |||| ||||||||  |||||||||| ||||||||  ||||||| |||||||| ||||| ||| | |||||    
T  34241094 tttccttgaggtatttctcccacaagatggttattggaaagatccaagacttcaagactgttcaaattggttaattctgcaggaatcataccagtgagca 34240995  T
Q  199 tatt 202  Q
    ||||    
T  34240994 tatt 34240991  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 42123233 - 42123308
Alignment:
Q  235 ccctttgagtgcatgaagctctccaataacattttgaatctccccttcaaatttatttcttgacaaatcaatactt 310  Q
    |||| |||||||||| |||| ||||||| ||||| ||||||| ||||||||||| |||||||||| ||||||||||    
T  42123233 ccctatgagtgcatgtagctttccaatagcatttggaatctctccttcaaatttgtttcttgacatatcaatactt 42123308  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 42117485 - 42117557
Alignment:
Q  235 ccctttgagtgcatgaagctctccaataacattttgaatctccccttcaaatttatttcttgacaaatcaata 307  Q
    ||||||||||||||| || ||||||||| ||||| ||||||| || |||||||| ||| ||||||||||||||    
T  42117485 ccctttgagtgcatggaggtctccaatagcatttggaatctctccctcaaatttgttttttgacaaatcaata 42117557  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 244 - 310
Target Start/End: Original strand, 41444107 - 41444173
Alignment:
Q  244 tgcatgaagctctccaataacattttgaatctccccttcaaatttatttcttgacaaatcaatactt 310  Q
    |||||||||||| |||||||||||| |||| || ||||||||||| |||| ||| ||||||||||||    
T  41444107 tgcatgaagctcaccaataacatttggaatgtctccttcaaatttgtttcctgaaaaatcaatactt 41444173  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 42128634 - 42128699
Alignment:
Q  242 agtgcatgaagctctccaataacattttgaatctccccttcaaatttatttcttgacaaatcaata 307  Q
    |||||||||||||| |||| | ||||| |||| || ||||||||||| ||||||||||||||||||    
T  42128634 agtgcatgaagctcaccaaaatcatttggaatatctccttcaaatttgtttcttgacaaatcaata 42128699  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 190
Target Start/End: Complemental strand, 41572547 - 41572456
Alignment:
Q  99 tttccttgaggtatttctccaactagatgattatgggaaagatttaagacttcaaaactgttcaggttggttagttctgcagaaatcacacc 190  Q
    |||||||||||||||||||| |||||||| ||||| |||||||| || ||| ||| || |||||| ||| ||| ||||| || ||| |||||    
T  41572547 tttccttgaggtatttctcccactagatggttatgagaaagattcaatactccaataccgttcagattgattaattctgaaggaattacacc 41572456  T

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Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 190
Target Start/End: Complemental strand, 41618186 - 41618095
Alignment:
Q  99 tttccttgaggtatttctccaactagatgattatgggaaagatttaagacttcaaaactgttcaggttggttagttctgcagaaatcacacc 190  Q
    |||||||||||||||||||| |||||||| ||||| |||||||| || ||| ||| || |||||| ||| ||| ||||| || ||| |||||    
T  41618186 tttccttgaggtatttctcccactagatggttatgagaaagattcaatactccaataccgttcagattgattaattctgaaggaattacacc 41618095  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 42128354 - 42128407
Alignment:
Q  40 aggtccacatttcattgacaagggaaatc--cataaccccaagtttccttcata 91  Q
    ||||||||| ||| |||||||||||||||  |||||||||||||||||||||||    
T  42128354 aggtccacaattctttgacaagggaaatccacataaccccaagtttccttcata 42128407  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 42128438 - 42128490
Alignment:
Q  101 tccttgaggtatttctccaactagatgattatgggaaagatttaagacttcaa 153  Q
    |||||||||||||||||| |||||||| ||||  ||||||| |||||||||||    
T  42128438 tccttgaggtatttctcccactagatggttatttgaaagatctaagacttcaa 42128490  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 41572629 - 41572576
Alignment:
Q  40 aggtccacatttcattgacaagggaaatc--cataaccccaagtttccttcata 91  Q
    |||| |||||||| |||||||||||||||  ||||| |||||||||||||||||    
T  41572629 aggttcacatttctttgacaagggaaatccgcataatcccaagtttccttcata 41572576  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 41618268 - 41618215
Alignment:
Q  40 aggtccacatttcattgacaagggaaatc--cataaccccaagtttccttcata 91  Q
    |||| |||||||| |||||||||||||||  ||||| |||||||||||||||||    
T  41618268 aggttcacatttctttgacaagggaaatccgcataatcccaagtttccttcata 41618215  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 8522856 - 8522928
Alignment:
Q  235 ccctttgagtgcatgaagctctccaataacattttgaatctccccttcaaatttatttcttgacaaatcaata 307  Q
    |||| ||| |||||||||||| |||||||  ||| ||||||| ||||||||||| ||||||||||||||||||    
T  8522856 ccctatgattgcatgaagctcaccaataatctttggaatctcgccttcaaatttgtttcttgacaaatcaata 8522928  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 8522665 - 8522737
Alignment:
Q  99 tttccttgaggtatttctccaactagatgattatgggaaagatttaagacttcaaaactgttcaggttggtta 171  Q
    ||||| |||||||||||||| || ||| |||||| ||||||||  |||||||||| |||||| || |||||||    
T  8522665 tttccctgaggtatttctcccacaagacgattattggaaagatccaagacttcaagactgttaagattggtta 8522737  T

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