View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1494_low_1 (Length: 719)
Name: NF1494_low_1
Description: NF1494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1494_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 88 - 583
Target Start/End: Original strand, 18691383 - 18691892
Alignment:
| Q |
88 |
tattcaaagtccaagcttgtgcataataggcatgttttcttattttcatgcatctgctttctaaagaagtctgcatgcaatgcattcacattttcttgat |
187 |
Q |
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| T |
18691383 |
tattcaaagtccaagcttgtgcataataggcatgttttcttattttcatgcatctgctttctaaggaagtctgcatgcaatgcattcacattttcttgat |
18691482 |
T |
|
| Q |
188 |
ctagtattctt--gtgttgtattatctctaatccttattataagaaaatctttgaagattattttggccctattcattagaaaatctctaatcacaattt |
285 |
Q |
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| T |
18691483 |
ctagtattcttttgtgttgtattatctctaatccttattataagaaaatctttgaagattattttggccctattcattagaaaatctctaatcacaattt |
18691582 |
T |
|
| Q |
286 |
ttatggtctatttagttcttaatagacttttctactcctcatttattatgtcactccgtattttgttccaaagtcaattctatacacatcaattctaacc |
385 |
Q |
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| T |
18691583 |
ttatggtctatttagttcttaatagacttttctactcctcatttattatgtcactccgtattttgttccaaagtcaattctatacacatcaattctaacc |
18691682 |
T |
|
| Q |
386 |
cttataaaatggaaccaaacatataaaagcttgataatgatttagataatattaatggataggtggattatagattaaataaagaccggccaaaattcac |
485 |
Q |
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| T |
18691683 |
cttataaaatggaaccaaacatataaaagcttgataatgatttagataatattaatggataggtggattatagattaaataaagaccggccaaaattcac |
18691782 |
T |
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| Q |
486 |
aactttaacaccttacaaggaaaccaaata------------ttaaattgcacaaccaatatttaacattactaccctattgtttgtccattttctctta |
573 |
Q |
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| T |
18691783 |
aactttaacaccttacaaggaaaccaaatattgtagggctttttaaattgcacaaccaatatttaacattactaccctattgtttgtccattttctctta |
18691882 |
T |
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| Q |
574 |
tatctatcca |
583 |
Q |
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| T |
18691883 |
tatccatcca |
18691892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 18691239 - 18691309
Alignment:
| Q |
18 |
tatgcaacgtcaacgttctggaatcgatggcaggactcttgctcatcgaactggatgtaacaaacaaggat |
88 |
Q |
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| T |
18691239 |
tatgcaacgtcaacattctggaatcgatggcaggacttttgctcgttgaactggatgtaacaaacaaggat |
18691309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 17901745 - 17901675
Alignment:
| Q |
18 |
tatgcaacgtcaacgttctggaatcgatggcaggactcttgctcatcgaactggatgtaacaaacaaggat |
88 |
Q |
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| T |
17901745 |
tatgcaacgtcgacgttctggaattgatggcaggactcttgctcgtcgacttggatgtaacaaacaaggat |
17901675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 670 - 699
Target Start/End: Original strand, 18691978 - 18692007
Alignment:
| Q |
670 |
aaggattctatatgtaatgttaaattaggt |
699 |
Q |
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| T |
18691978 |
aaggattctatatgtaatgttaaattaggt |
18692007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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