View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1494_low_10 (Length: 335)
Name: NF1494_low_10
Description: NF1494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1494_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 48 - 327
Target Start/End: Original strand, 28059676 - 28059956
Alignment:
| Q |
48 |
ccattgcagcaacatggttttggattcttgaggagcaaaaccgtggcacaggattgcaatttccttggtcccataatattgtaatatacccactaattgt |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28059676 |
ccattgcagcaacatggttttggattcttgaggagcaaaaccgtggcacaggattgcaatttccttggtcccataatattgtaatatacccactaattgt |
28059775 |
T |
|
| Q |
148 |
tttcaccatagtacttgttgggtagtatgactctatgtttctcaaaacttcaaagaatctaaatgtttcaatgaatgggt-actctcttctttctctaga |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
28059776 |
tttcaccatagtacttgttgggtagtatgactctatgtttctcaaaacttcaaagaatctaaatgtttcaaagaatgggtgactctcttctttctctaga |
28059875 |
T |
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| Q |
247 |
gcacctaaccaaatcccaaaattttacccaagtatatttgtagaattagggaaaagttttcttagatatgaaattcttctc |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28059876 |
gcacctaaccaaatcccaaaattttacccaagtatatttgtagaattagggaaaagttttcttagatatgaaattcttctc |
28059956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 48 - 327
Target Start/End: Original strand, 28070101 - 28070381
Alignment:
| Q |
48 |
ccattgcagcaacatggttttggattcttgaggagcaaaaccgtggcacaggattgcaatttccttggtcccataatattgtaatatacccactaattgt |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28070101 |
ccattgcagcaacatggttttggattcttgaggagcaaaaccgtggcacaggattgcaatttccttggtcccataatattgtaatatacccactaattgt |
28070200 |
T |
|
| Q |
148 |
tttcaccatagtacttgttgggtagtatgactctatgtttctcaaaacttcaaagaatctaaatgtttcaatgaatgggt-actctcttctttctctaga |
246 |
Q |
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| T |
28070201 |
tttcaccatagtacttgttgggtagtatgactctatgtttctcaaaacttcaaagaatctaaatgtttcaaagaatgggtgactctcttctttctctaga |
28070300 |
T |
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| Q |
247 |
gcacctaaccaaatcccaaaattttacccaagtatatttgtagaattagggaaaagttttcttagatatgaaattcttctc |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28070301 |
gcacctaaccaaatcccaaaattttacccaagtatatttgtagaattagggaaaagttttcttagatatgaaattcttctc |
28070381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 48 - 327
Target Start/End: Complemental strand, 28039541 - 28039257
Alignment:
| Q |
48 |
ccattgcagcaacatggttttggattcttgaggagcaaaaccgtggcacaggattgcaatttccttggtcccataatattgtaatatacccactaattgt |
147 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28039541 |
ccattgcagcaacatggttttgaattcttgaggagcaaaaccgtggcacaggattgcaatttccttggtcccataatattgtaatatacccactaattgt |
28039442 |
T |
|
| Q |
148 |
tttcaccatagtacttgttgggtagtat-----gactctatgtttctcaaaacttcaaagaatctaaatgtttcaatgaatgggtactctcttctttctc |
242 |
Q |
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|
|||||||||||||||| ||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28039441 |
tttcaccatagtactttttgggtagtatagtatgactctctctttctcaaaacttcaaagaatctaaatgtttcaatgaatgggtactctctactttctc |
28039342 |
T |
|
| Q |
243 |
tagagcacctaaccaaatcccaaaattttacccaagtatatttgtagaattagggaaaagttttcttagatatgaaattcttctc |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28039341 |
tagagcacctaaccaaatcccaaaattttacccaagtatatttgtagaattagggaaaagttttcttagatatgaaattcttctc |
28039257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 265 - 327
Target Start/End: Original strand, 18695752 - 18695815
Alignment:
| Q |
265 |
aaattttacccaagtatatttgtagaattagggaaaagtt-ttcttagatatgaaattcttctc |
327 |
Q |
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|||||||| |||||| || ||||||||||||||||||||| | |||||||||| ||||| |||| |
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| T |
18695752 |
aaattttatccaagtgtacttgtagaattagggaaaagttatgcttagatatgtaattcatctc |
18695815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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