View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1494_low_14 (Length: 265)
Name: NF1494_low_14
Description: NF1494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1494_low_14 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 265
Target Start/End: Complemental strand, 53278735 - 53278483
Alignment:
| Q |
13 |
aatatcagagggttcaaaatataaaatatattttttaagttcaatgagttcggttgaaccccctcatcatataaatatttcatgtaaaattatatacaat |
112 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53278735 |
aatatcaaagggttcaaaatataaaatatattttttaagttcaatgagttcggttgaaccccctcatcatataaatatttcatgtaaaattatatacaat |
53278636 |
T |
|
| Q |
113 |
tctataatcatttgatatggtatgagactcatcaagttcaataacatattaagtgattttataattgcgtaacattttagatgaatgatctatatgatat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
53278635 |
tctataatcatttgatatggtatgagactcatcaagttcaataacatattaagtgattttatatttgcgtaacattttagatgaatgatctatatgatat |
53278536 |
T |
|
| Q |
213 |
aagttttcaatccaactatgaattggtaataaaaagaagtgtcggattataca |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53278535 |
aagttttcaatccaactatgaattggtaataaaaagaagtgtcggattataca |
53278483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 33335939 - 33335979
Alignment:
| Q |
93 |
catgtaaaattatatacaattctataatcatttgatatggt |
133 |
Q |
| |
|
||||||||||| ||||||| |||| |||||||||||||||| |
|
|
| T |
33335939 |
catgtaaaattttatacaaatctaaaatcatttgatatggt |
33335979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 265
Target Start/End: Original strand, 11835917 - 11836168
Alignment:
| Q |
13 |
aatatcagagggttcaaaatataaaatatattttttaagttcaatgagttcggttgaaccccctcatcatataaatatttcatgtaaaattatatacaat |
112 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11835917 |
aatatcaaagggttcaaaatataaaatatattttttaagttcaatcagttcggttgaacccc-tcatcatataaatatttcatgtaaaattatatacaat |
11836015 |
T |
|
| Q |
113 |
tctataatcatttgatatggtatgagactcatcaagttcaataacatattaagtgattttataattgcgtaacattttagatgaatgatctatatgatat |
212 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11836016 |
tctataattatttgatatggtatgagactcatcaagctcaataacatattaagtgattttatatttgcgtaacattttagatgaatgatctatatgatat |
11836115 |
T |
|
| Q |
213 |
aagttttcaatccaactatgaattggtaataaaaagaagtgtcggattataca |
265 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11836116 |
aagttttcaatccagctatgaactggtaataaaaagaagtgtcggattataca |
11836168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 48467291 - 48467355
Alignment:
| Q |
150 |
tcaataacatattaagtgattttataattgcgtaacattttagatgaatgatctatatgatataa |
214 |
Q |
| |
|
|||||||||||| || |||||||| | || ||||| |||||| |||||| ||||||||||||||| |
|
|
| T |
48467291 |
tcaataacatataaaatgattttagattttcgtaaaattttacatgaataatctatatgatataa |
48467355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University