View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1494_low_15 (Length: 258)
Name: NF1494_low_15
Description: NF1494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1494_low_15 |
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| [»] scaffold0137 (2 HSPs) |
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Alignment Details
Target: scaffold0137 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 5044 - 5128
Alignment:
| Q |
164 |
cctgtgcagccttgtaagacaaaataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttg |
248 |
Q |
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| T |
5044 |
cctgtgcagccttgtaagacaagataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttg |
5128 |
T |
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Target: scaffold0137; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 4883 - 4953
Alignment:
| Q |
1 |
agccaaacccaatcttataggatgagaagatcgaagatccgccgtagcaatatccttcaaacaatcacaac |
71 |
Q |
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| T |
4883 |
agccaaacccaatcttataggatgagaagatcgaagatccgcagcagcaatatccttcaaacaatcacaac |
4953 |
T |
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Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 3898713 - 3898797
Alignment:
| Q |
164 |
cctgtgcagccttgtaagacaaaataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttg |
248 |
Q |
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| T |
3898713 |
cctgtgcagccttgtaagacaagataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttg |
3898797 |
T |
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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 3897227 - 3897297
Alignment:
| Q |
1 |
agccaaacccaatcttataggatgagaagatcgaagatccgccgtagcaatatccttcaaacaatcacaac |
71 |
Q |
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| T |
3897227 |
agccaaacccaatcttataggatgagaagatcgaagatctgccgcagcaatatccttcaaacaatcacaac |
3897297 |
T |
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Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 46283571 - 46283490
Alignment:
| Q |
164 |
cctgtgcagccttgtaagacaaaataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacct |
245 |
Q |
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| T |
46283571 |
cctgtgcagctttgtaagacaacatagtatcctcagcagcagattttttctcatcaccaatcttaaactcagccaaatacct |
46283490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 46283702 - 46283646
Alignment:
| Q |
1 |
agccaaacccaatcttataggatgagaagatcgaagatccgccgtagcaatatcctt |
57 |
Q |
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|||||||||||||||||||||||||| ||| |||||||||| | |||||||||||| |
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| T |
46283702 |
agccaaacccaatcttataggatgagttgatggaagatccgcagcagcaatatcctt |
46283646 |
T |
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