View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1494_low_19 (Length: 239)
Name: NF1494_low_19
Description: NF1494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1494_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 30246466 - 30246230
Alignment:
| Q |
1 |
cacaatctcttgaatatatggttctcgacatgatgagacttgagcagttagtttggctactaaaattgaaacctagctatatgtctgattatatatgtct |
100 |
Q |
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| T |
30246466 |
cacaatctcttgaatatatggttctcgacatgatgagacttgagcagttagtttggctactaaaattgaaacctagctatatgtctgattatatatgtct |
30246367 |
T |
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| Q |
101 |
aattaaagat-ttaatgttttttattctttttggtaatattaatgttctctattttagaggtgaggtgtcaatgttataatgcaccaaaaatctcacgta |
199 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30246366 |
aattaaagaggttaatgttttttattctttttggtaatattaatgttctctattttagaggtgaggtgtcaatgttataatgcaccaaaaatctcacgta |
30246267 |
T |
|
| Q |
200 |
atctagtttataaataacattaacactctttaatatt |
236 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
30246266 |
atctagtttataaataacattaacactctttaatatt |
30246230 |
T |
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