View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1494_low_2 (Length: 580)
Name: NF1494_low_2
Description: NF1494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1494_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 546; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 9 - 562
Target Start/End: Complemental strand, 48415188 - 48414635
Alignment:
| Q |
9 |
agaagcaaaggaagagactgaaggaagaaatgagtttgatgagagtgttctttaaaagattgaccaaaactgtggttaatcaccaagaggttcttcagaa |
108 |
Q |
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| T |
48415188 |
agaagcaaaagaagagactgaaggaagaaatgagtttgatgagagtgttctttaaaagattgaccaaaactgtggttaatcaccaagaggttcttcagaa |
48415089 |
T |
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| Q |
109 |
taaattgttggaggtgattgatagaatggaaaaagaaaggatgcagagggaagaaaattggaggcgtgaagaaagtgaaatatacgaaagagaagctgtg |
208 |
Q |
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| T |
48415088 |
taaattgttggaggtgattgatagaatggaaaaagaaaggatgcagagggaagaaaattggaggcgggaagaaagtgaaatatacgaaagagaagctgtg |
48414989 |
T |
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| Q |
209 |
atgaaagcacgtgagcgtgattttgctaaacggagagaatcttccattgtttccagcattgagaaaataacaggtcgaagattttctagtcagtgacagt |
308 |
Q |
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| T |
48414988 |
atgaaagcacgtgagcgtgattttgctaaacggagagaatcttccattgtttccagcattgagaaaataacaggtcgaagattttctagtcagtgacagt |
48414889 |
T |
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| Q |
309 |
aatagaatagaagattaatgtaaggattatttaaattttattatagatgtagttttagtttgtgttgaaagaaagattgaaatttgccaactacattcat |
408 |
Q |
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| T |
48414888 |
aatagaatagaagattaatgtaaggattatttaaattttattatagatgtagttttagtttgtgttgaaagaaagattgaaatttgccaactacattcat |
48414789 |
T |
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| Q |
409 |
ttgcagaaaatgctgaatgcatgtcacaactgcaaccatcaataatgatgtagttttaatatgattagtttgcatatcctgaactttggttgagatgtaa |
508 |
Q |
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| T |
48414788 |
ttgcagaaaatgctgaatgcatgtcacaactgcaaccatcaataatgatgtagttttaatatgattagtttgcatatcctgaactttggttgagatgtaa |
48414689 |
T |
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| Q |
509 |
aagtaagtgaatggtcaggatgcctgcattgaaccaaagatatatagttaaaag |
562 |
Q |
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| T |
48414688 |
aagtaagtgaatggtcaggatgcctgcattgaaccaaagatatatagttaaaag |
48414635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 392
Target Start/End: Complemental strand, 48403722 - 48403658
Alignment:
| Q |
327 |
tgtaaggattatttaaattttattatagatgtagttttagtttgtgttgaaagaaagattgaaatt |
392 |
Q |
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| T |
48403722 |
tgtaagtattatttcaattttatt-taaatgcaatttgagtttgtgttgaaaaaaagattgaaatt |
48403658 |
T |
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