View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1494_low_21 (Length: 232)
Name: NF1494_low_21
Description: NF1494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1494_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 9394542 - 9394742
Alignment:
| Q |
15 |
aataaattcaattaccatgccaaaacaaataggagaatcaataaagatcgactaatatgaataatgnnnnnnnnnnnnnntttaagctgctactataaaa |
114 |
Q |
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| T |
9394542 |
aataaattcaattaccatgccaaaacaaataggagaatcaataaagatcgactaatatgaataatgaaaaaaaaaaaaaatt-aagctgctactataaaa |
9394640 |
T |
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| Q |
115 |
tattttctgtgcacttttgaaattccatcatccattttccttgtatacacaaataagaaaattttaaaatcatctccaacacaagaaagcttcacatttg |
214 |
Q |
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| T |
9394641 |
tattttctttgcacttttgaaattccatcatccattttccttgtatacacaaataagaaaatttgaaaatcatctccaacacaagaaagcttcacatttg |
9394740 |
T |
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| Q |
215 |
tt |
216 |
Q |
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|| |
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| T |
9394741 |
tt |
9394742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 136 - 217
Target Start/End: Original strand, 9406070 - 9406151
Alignment:
| Q |
136 |
attccatcatccattttccttgtatacacaaataagaaaattttaaaatcatctccaacacaagaaagcttcacatttgttc |
217 |
Q |
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| T |
9406070 |
attccatcatccattttccttgtatacacaaataagaaaattttaaaatcatctccaacacaagaaagcttcacattggttc |
9406151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 136 - 217
Target Start/End: Original strand, 9424313 - 9424394
Alignment:
| Q |
136 |
attccatcatccattttccttgtatacacaaataagaaaattttaaaatcatctccaacacaagaaagcttcacatttgttc |
217 |
Q |
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| T |
9424313 |
attccatcatccattttccttatatacacaaataagaaaattttaaaatcatctccatcacaagaaagcttcacattggttc |
9424394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 9405872 - 9405920
Alignment:
| Q |
15 |
aataaattcaattaccatgccaaaacaaataggagaatcaataaagatc |
63 |
Q |
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| T |
9405872 |
aataaattcaattagcatctcaaaacaaataggagaatcaataaagatc |
9405920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 53594664 - 53594604
Alignment:
| Q |
157 |
gtatacacaaataagaaaattttaaaatcatctccaacacaagaaagcttcacatttgttc |
217 |
Q |
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|||| ||||||||| || ||||||||||||||||||| ||| ||||||||||||| |||| |
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| T |
53594664 |
gtatgcacaaataacaagattttaaaatcatctccaagacataaaagcttcacattggttc |
53594604 |
T |
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