View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1494_low_22 (Length: 229)

Name: NF1494_low_22
Description: NF1494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1494_low_22
NF1494_low_22
[»] chr6 (8 HSPs)
chr6 (123-212)||(1878598-1878687)
chr6 (123-212)||(1884548-1884637)
chr6 (12-61)||(1878750-1878799)
chr6 (125-206)||(1891620-1891701)
chr6 (124-212)||(1896652-1896740)
chr6 (124-206)||(1906330-1906412)
chr6 (123-203)||(1912158-1912238)
chr6 (126-209)||(1917221-1917304)


Alignment Details
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 123 - 212
Target Start/End: Complemental strand, 1878687 - 1878598
Alignment:
Q  123 tgcaaacctgaaagtgacagctaagatgaaagtgaaagcaggtatgagattaccaattgatgcagaaagtgttggagaactgtaactaat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1878687 tgcaaacctgaaagtgacagctaagatgaaagtgaaagcaggtatgagattaccaattgatgcagaaagtgttggagaactgtaactaat 1878598  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 123 - 212
Target Start/End: Complemental strand, 1884637 - 1884548
Alignment:
Q  123 tgcaaacctgaaagtgacagctaagatgaaagtgaaagcaggtatgagattaccaattgatgcagaaagtgttggagaactgtaactaat 212  Q
    ||||||||||||| | |||||||| |||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||| ||||    
T  1884637 tgcaaacctgaaaataacagctaacatgaaagtgaaagcaggtacaagattaccaattgctgcagaaagtgttggagaactgtaattaat 1884548  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 1878799 - 1878750
Alignment:
Q  12 attattcttagatatttaagctatcatatgcacaaaaattcctttgagtg 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1878799 attattcttagatatttaagctatcatatgcacaaaaattcctttgagtg 1878750  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 125 - 206
Target Start/End: Complemental strand, 1891701 - 1891620
Alignment:
Q  125 caaacctgaaagtgacagctaagatgaaagtgaaagcaggtatgagattaccaattgatgcagaaagtgttggagaactgta 206  Q
    ||||||||||| |||||||||  |||||||||||||||||||  ||||||||||||| || || ||||||||||||||||||    
T  1891701 caaacctgaaaatgacagctagaatgaaagtgaaagcaggtaccagattaccaattgctgaagcaagtgttggagaactgta 1891620  T

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Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 212
Target Start/End: Complemental strand, 1896740 - 1896652
Alignment:
Q  124 gcaaacctgaaagtgacagctaagatgaaagtgaaagcaggtatgagattaccaattgatgcagaaagtgttggagaactgtaactaat 212  Q
    ||||||||||| ||||||||||  |||||||||||||||||||| |||||| ||| || || || ||||||||||||||||||| ||||    
T  1896740 gcaaacctgaatgtgacagctagcatgaaagtgaaagcaggtattagattagcaagtgctgaagcaagtgttggagaactgtaattaat 1896652  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 206
Target Start/End: Complemental strand, 1906412 - 1906330
Alignment:
Q  124 gcaaacctgaaagtgacagctaagatgaaagtgaaagcaggtatgagattaccaattgatgcagaaagtgttggagaactgta 206  Q
    |||||||||||||| |||||||  |||||||||||||||||||  |||||| |||||| || || ||||||||||||||||||    
T  1906412 gcaaacctgaaagtaacagctagcatgaaagtgaaagcaggtaccagattagcaattgctgaagcaagtgttggagaactgta 1906330  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 1912238 - 1912158
Alignment:
Q  123 tgcaaacctgaaagtgacagctaagatgaaagtgaaagcaggtatgagattaccaattgatgcagaaagtgttggagaact 203  Q
    ||||||||||||||| |||||||  |||||||||||||||||||  |||||  |||||| || || |||||||||||||||    
T  1912238 tgcaaacctgaaagtaacagctagcatgaaagtgaaagcaggtaccagattggcaattgctgaagcaagtgttggagaact 1912158  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 209
Target Start/End: Complemental strand, 1917304 - 1917221
Alignment:
Q  126 aaacctgaaagtgacagctaagatgaaagtgaaagcaggtatgagattaccaattgatgcagaaagtgttggagaactgtaact 209  Q
    ||||||| || |||||||||| ||||| || |||||||| ||||| || |||||||  |  |||||||| ||||||||||||||    
T  1917304 aaacctgcaaatgacagctaacatgaaggtaaaagcaggaatgaggtttccaattgcagaggaaagtgtaggagaactgtaact 1917221  T

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