View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1494_low_23 (Length: 219)
Name: NF1494_low_23
Description: NF1494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1494_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 38 - 204
Target Start/End: Complemental strand, 10475050 - 10474884
Alignment:
| Q |
38 |
catcgcagttttgcatactaattatttggttttacgtttagcatagatgtctcatatgtttttgttttgacaaatagtttatcaacatattgtcttcaag |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10475050 |
catcgcagttttgcatactaattatttggttttacgtttagcatagatgtgtcctatgtttttgttttgataaatagtttatcaacatattgtcttcaag |
10474951 |
T |
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| Q |
138 |
tgttgaggatgttgaagtttgagcatcctaaatgtgtctcaactaaaaatagcacatacatgtcatt |
204 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10474950 |
tgttgaggatgttgaagtttgagcatcctaaacgtgtctcaactaaaaatagcacatacatgtcatt |
10474884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 38 - 201
Target Start/End: Complemental strand, 10489273 - 10489110
Alignment:
| Q |
38 |
catcgcagttttgcatactaattatttggttttacgtttagcatagatgtctcatatgtttttgttttgacaaatagtttatcaacatattgtcttcaag |
137 |
Q |
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||||| ||||| |||| |||||||||||| ||||| |||||| |||| || ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10489273 |
catcggagtttggcatgctaattatttggctttacatttagcgaagatttcaaatatgtttttgttttgacaaatagtttatcaacatattgtcttaaag |
10489174 |
T |
|
| Q |
138 |
tgttgaggatgttgaagtttgagcatcctaaatgtgtctcaactaaaaatagcacatacatgtc |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10489173 |
tgttgaggatgttgaagtttgagcatcctaaatgtgtctcaactaaaaaaagcacatacatgtc |
10489110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 97 - 201
Target Start/End: Original strand, 7478278 - 7478382
Alignment:
| Q |
97 |
ttttgttttgacaaatagtttatcaacatattgtcttcaagtgttgaggatgttgaagtttgagcatcctaaatgtgtctcaactaaaaatagcacatac |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
7478278 |
ttttgttttgacaaatagtttatcaacatattgtcttcaagtgttgaggatgttgaagtttgagcatcctaaatgtgtgtcaactaaaaacagcacatac |
7478377 |
T |
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| Q |
197 |
atgtc |
201 |
Q |
| |
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||||| |
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|
| T |
7478378 |
atgtc |
7478382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 44 - 204
Target Start/End: Complemental strand, 10493339 - 10493182
Alignment:
| Q |
44 |
agttttgcatactaattatttggttttacgtttagcatagatgtctcatatgtttttgttttgacaaatagtttatcaacatattgtcttcaagtgttga |
143 |
Q |
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|||||||||| | ||||||||||||||| ||||||| |||| | ||| ||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
10493339 |
agttttgcatgcatattatttggttttacatttagcaaagatttatcagatgtttttgttttgacaaatagtttatcaacatattgtcttgaag---tga |
10493243 |
T |
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| Q |
144 |
ggatgttgaagtttgagcatcctaaatgtgtctcaactaaaaatagcacatacatgtcatt |
204 |
Q |
| |
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|||||||||||||||| | |||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
10493242 |
ggatgttgaagtttgaacttcctaaatgtgtctcaactaaaaaaagcacatacatttcatt |
10493182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 10507901 - 10507777
Alignment:
| Q |
39 |
atcgcagttttgcatactaattatttggttttacgtttagcatagatgtctcatatgtttttgttttgacaaatagtttatcaacatattgtcttcaagt |
138 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||| ||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||| | || |
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| T |
10507901 |
atcggagttttgcatactaattattttgttttacatttagcaaagatttctcatatgtttttgttttaacaaatagtttatcaacatattgtcttgaggt |
10507802 |
T |
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| Q |
139 |
gttgaggatgttgaagtttgagcat |
163 |
Q |
| |
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|| |||||||||||||||||||||| |
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| T |
10507801 |
gtagaggatgttgaagtttgagcat |
10507777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 7481877 - 7481977
Alignment:
| Q |
96 |
tttttgttttgacaaatagtttatcaacatattgtcttcaagtgttgaggatgttgaagtttgagcatcctaaatgtgtctcaactaaaaatagcacata |
195 |
Q |
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|||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
7481877 |
tttttgttttgacaaataatttatcaacatattgtcttgacgtgttgaggatgttgaagtttgagcttcctaaatgtgtctcaactaaaaaaagcacata |
7481976 |
T |
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| Q |
196 |
c |
196 |
Q |
| |
|
| |
|
|
| T |
7481977 |
c |
7481977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 10463853 - 10463766
Alignment:
| Q |
38 |
catcgcagttttgcatactaattatttggttttacgtttagcatagatgtctcatatgtttttgttttgacaaatagtttatcaacata |
126 |
Q |
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|
||||||| |||| |||||||||||||||||||||| ||||||| || | | || |||||||||||||||| ||||||||||||||||| |
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| T |
10463853 |
catcgcactttttcatactaattatttggttttacatttagcaaag-tttttctcatgtttttgttttgactaatagtttatcaacata |
10463766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 91 - 134
Target Start/End: Complemental strand, 10545509 - 10545466
Alignment:
| Q |
91 |
atatgtttttgttttgacaaatagtttatcaacatattgtcttc |
134 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10545509 |
atatgattttgttttgacaaatagtttatcaacatattgtcttc |
10545466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 144
Target Start/End: Complemental strand, 10863352 - 10863259
Alignment:
| Q |
57 |
aattatttggttttacgtttagcatagatgtctcatatgtttttgttttgacaaatagttt------atcaacatattgtcttcaagtgttgag |
144 |
Q |
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||||||||||||||| |||||| |||| | ||||||||| | |||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
10863352 |
aattatttggttttatatttagcgaagatttgtcatatgttctacttttgacaaatagtttatcattatcaacatattgtcttaaagtgttgag |
10863259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 28102432 - 28102486
Alignment:
| Q |
89 |
tcatatgtttttgttttgacaaatagtttatcaacatattgtcttcaagtgttga |
143 |
Q |
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||||||||||| || | | ||||||||||||||||||||||||| ||||||||| |
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|
| T |
28102432 |
tcatatgttttacttctaataaatagtttatcaacatattgtcttaaagtgttga |
28102486 |
T |
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