View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1494_low_3 (Length: 429)
Name: NF1494_low_3
Description: NF1494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1494_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 169 - 412
Target Start/End: Original strand, 30246643 - 30246887
Alignment:
| Q |
169 |
accagtagatgagtgacatgttagattcaaatcacacgacttgacttcccaactcactatttgatagatactcttgtcctaataattgaattcaaccaca |
268 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30246643 |
accaatagatgagtgacatgttagattcaaatcaaacgacttgacttcccaactcactatttgatagatactcttgtcctaataattgaattcaaccaca |
30246742 |
T |
|
| Q |
269 |
cactcatagctaattctcttaattaatttccctaacatatataactattaactaccaataccaatacca--taccacttaataattttgttggcctcatt |
366 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||| |
|
|
| T |
30246743 |
cacttatagctaattctcttaattaatttccctaacatatataactattaactaccaataccaataccaagta-cacaaaataattttgttggcctcatt |
30246841 |
T |
|
| Q |
367 |
cattcaccattgttgtttgttggtagcataatcactggatatcact |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30246842 |
cattcaccattgttgtttgttggtagcataatcactggatatcact |
30246887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 30246448 - 30246602
Alignment:
| Q |
14 |
atatattcaagagattgtgataattattcgtaaaatggttaattaatttcgtgtaccgtgaaataaaagaggactttgaggca----aagcaatatagaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30246448 |
atatattcaagagattgtgataattattcgtaaaatggttaattaatttcatgtaccgtgaaataaaagaggactttgaggcaaagcaagcaatatagaa |
30246547 |
T |
|
| Q |
110 |
aagaaaaagaattatattaaaaaacacttgacaatgacatttaactctcaactta |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30246548 |
aagaaaaagaattatattaaaaaacacttgacaatgacatttaactctcaactta |
30246602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University