View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1494_low_8 (Length: 360)
Name: NF1494_low_8
Description: NF1494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1494_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 13766052 - 13765748
Alignment:
| Q |
19 |
catggtcggtctataggtctatgggtctgagaaatgatgcgtaaagaaattcacaatcgcttgtttgatctttgcaacatcctccatccacctttccacc |
118 |
Q |
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| T |
13766052 |
catggtcggtctataggtctatgggtctgagaaatgatgcgtaaagaaattcacaatcgcttgtttgttctttgcaacatcatccatccacctttccacc |
13765953 |
T |
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| Q |
119 |
ctaggtgccgagatggaattcctcatacctctattcttcacacaggcgtggaaataagttgtattatgtccttctctctctcaaccattttgctcttgac |
218 |
Q |
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| T |
13765952 |
ctaggagccgagatggaattcctcatacctctattcttcacacaggcgaggaaataagttgtattatgtccttctctctctcaaccactttgctcttgac |
13765853 |
T |
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| Q |
219 |
cattggaacatctacgagtcttagatcttcaaaatagtccacaaatacgccaaacactggttcttattagctacctccaccacaacaagatcccttccct |
318 |
Q |
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||||||||||||| |||||||| |||| |||||| ||| ||||||| ||||||||||||||||||| |||||||||||| | |||||||||||| |||| |
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| T |
13765852 |
cattggaacatctgcgagtcttggatcgtcaaaacagtttacaaataggccaaacactggttcttatcagctacctccacaaaaacaagatccctcccct |
13765753 |
T |
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| Q |
319 |
tagcc |
323 |
Q |
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||||| |
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| T |
13765752 |
tagcc |
13765748 |
T |
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