View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14950_high_1 (Length: 622)
Name: NF14950_high_1
Description: NF14950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14950_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 17 - 606
Target Start/End: Original strand, 41391733 - 41392323
Alignment:
| Q |
17 |
aatgtggttaacctacgaccacaaggaattcgaattcgtaagtgaatctgaatttcagaacaaaagagaaaatatgtattgcctcagaaacaccatgccc |
116 |
Q |
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| T |
41391733 |
aatgtgggaaacctacgaccacaaggaattcgaattcgtaagcgaatctgaatttcagaacaaaagaggaaatatgtattgcctcagaaacaccatgccc |
41391832 |
T |
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| Q |
117 |
tatccatccctacagtaggagaatccaacaacaccaacaatcagaaaaaatgacttctag-tacccatctttgttaagtaattcacacaatggttccctt |
215 |
Q |
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| T |
41391833 |
tatccatccctacagtaggagaatccaacaacaccaacaatcagaaaaaatgacttctaggtacccatctttgttaagtaattcacacaatggttccctt |
41391932 |
T |
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| Q |
216 |
ctcggggagcatggaccaaattagaattcttaatctctcagtctcagcaacatatttctgtatattagattttttgttcaacactgtgataagtttgagt |
315 |
Q |
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| T |
41391933 |
ctcggggagcatggaccaaattagaattcttaatctctcagtctcagcaacatatttctgtatattagattttttgttcaacactgtgataagtttgagg |
41392032 |
T |
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| Q |
316 |
acttgttgcaatataaataaataaatttatagacattggagagtctaattcaattataactttcttgtacccttttcttttccaaaccaaagtgatatta |
415 |
Q |
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| T |
41392033 |
acttgttgcaatataaataaataaatttatagacattgaagagtctaattcaattataactttcttgtacccttttcttttccaaaccaaagtgatatta |
41392132 |
T |
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| Q |
416 |
taaagaatagcaagttatgcctacatattagaaacaatctcgcaagagcttgagaagcctacccactcttcaaactaatttcttattaatctttcaaagt |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41392133 |
taaagaatagcaagttatgcctacatattagaaacaatctcgcaagagcttgagaagcctacccactcttcaaactaatttcttattaaactttcaaagt |
41392232 |
T |
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| Q |
516 |
cagccttatcaagtttcccaaagaaattgtcatctacattaatggttctttggtattgcccttagaaggagaccacttcacaaaacaaaca |
606 |
Q |
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| T |
41392233 |
cagccttatcaagtttcccaaagaaattgtcatctacattaatggttatttggtattgcccttagaaggagaccacttcacaaaacaaaca |
41392323 |
T |
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