View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14950_high_3 (Length: 410)

Name: NF14950_high_3
Description: NF14950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14950_high_3
NF14950_high_3
[»] chr3 (11 HSPs)
chr3 (153-402)||(224717-224966)
chr3 (18-156)||(224548-224689)
chr3 (263-403)||(210345-210485)
chr3 (263-402)||(221893-222032)
chr3 (263-398)||(197070-197205)
chr3 (263-402)||(216948-217087)
chr3 (263-398)||(204988-205123)
chr3 (310-397)||(198274-198361)
chr3 (302-402)||(226108-226208)
chr3 (302-398)||(211665-211761)
chr3 (76-127)||(216723-216774)
[»] chr4 (2 HSPs)
chr4 (263-398)||(6903370-6903505)
chr4 (310-373)||(6904803-6904866)
[»] chr5 (1 HSPs)
chr5 (263-402)||(29838223-29838362)
[»] chr1 (1 HSPs)
chr1 (289-401)||(3808344-3808457)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 153 - 402
Target Start/End: Original strand, 224717 - 224966
Alignment:
Q  153 ttaaaaactaaaatcctcactcaccagagttctatacttataggtagaagtaaaagaagggtttaattctgttccttcatcctcacttggtgaatcatca 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  224717 ttaaaaactaaaatcctcactcaccagagttctatacttataggtagaagtaaaagaagggtttaattctgttccttcatcctcacttggtgaatcatca 224816  T
Q  253 gcataattgatttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaa 352  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||  ||||||||||||||| |||||||||||||||| | |||||||||||||||||    
T  224817 gcataattgatttcaaccctggaccttttcgtaggtctaggacactctgtgtttgtttctccattagtacttggagttttgagtggatagcaaatctcaa 224916  T
Q  353 cagaagttacatcaaatataataacattaaactttgaattcccttcatat 402  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  224917 cagaagttacatcaaatataataacactaaactttgaattcccttcatat 224966  T

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Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 224548 - 224689
Alignment:
Q  18 ctaaacgtgtacaacaaacatcccattgctctcc---attgcaattttcgagcttcacaacaacatttcgtttcagatgctttgatgcaaaatcagcatt 114  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  224548 ctaaacgtgtacaacaaacatcccattgctctcctccattgcaattttggagcttcacaacaacatttcgtttcagatgctttgatgcaaaatcagcatt 224647  T
Q  115 aatatactgcacaagggagcgagggaggacacatcaatttaa 156  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  224648 aatatactgcacaagggagcgaggtaggacacatcaatttaa 224689  T

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Target: chr3; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 263 - 403
Target Start/End: Original strand, 210345 - 210485
Alignment:
Q  263 tttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttac 362  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  210345 tttcaaccttggaccttttcataggcctaggacactcggtgtttgtttctccactagtacttggagtttttaatggatagcaaatttcaacagaagttgc 210444  T
Q  363 atcaaatataataacattaaactttgaattcccttcatatc 403  Q
    |||||||||||||||  |||| |||||||||||||| ||||    
T  210445 atcaaatataataacgctaaaatttgaattcccttcgtatc 210485  T

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Target: chr3; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 263 - 402
Target Start/End: Original strand, 221893 - 222032
Alignment:
Q  263 tttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttac 362  Q
    |||||||| ||||||||||| |||| ||| ||||||| ||||||||||||||| || ||||| ||||||| |||||||||||||||||||||||||||||    
T  221893 tttcaaccttggaccttttcctaggactatgacactttgtgtttgtttctccattaatactttgagttttgaatggatagcaaatctcaacagaagttac 221992  T
Q  363 atcaaatataataacattaaactttgaattcccttcatat 402  Q
    ||||||||||| ||||||||||||||||| ||||||||||    
T  221993 atcaaatataacaacattaaactttgaatccccttcatat 222032  T

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Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 263 - 398
Target Start/End: Original strand, 197070 - 197205
Alignment:
Q  263 tttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttac 362  Q
    |||||||| ||||||||||| |||| |||| ||| || ||||||| ||||||| ||  ||||||||||||||||||||| |||||||||||| |||||||    
T  197070 tttcaaccttggaccttttcgtaggactagcacattttgtgtttggttctccattaacacttggagtttttaatggataacaaatctcaacataagttac 197169  T
Q  363 atcaaatataataacattaaactttgaattcccttc 398  Q
     ||||||||||||||| |||||||||||||||||||    
T  197170 gtcaaatataataacactaaactttgaattcccttc 197205  T

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Target: chr3; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 263 - 402
Target Start/End: Original strand, 216948 - 217087
Alignment:
Q  263 tttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttac 362  Q
    |||||||| ||||||||||| |||| ||| || |||| || |||||||||||| | |||||| ||||||| ||||||||||||||||||| ||||||| |    
T  216948 tttcaaccttggaccttttcctaggactatgaaactttgtttttgtttctccatttgtactttgagttttgaatggatagcaaatctcaatagaagttgc 217047  T
Q  363 atcaaatataataacattaaactttgaattcccttcatat 402  Q
    |||||||||||  ||| |||||||||||| ||||||||||    
T  217048 atcaaatataaagacactaaactttgaatccccttcatat 217087  T

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Target: chr3; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 263 - 398
Target Start/End: Complemental strand, 205123 - 204988
Alignment:
Q  263 tttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttac 362  Q
    |||||||||| || |||||  ||||  ||||||| |  || |||||||||||| ||||||| |||||||| | |||||||||||||||||| ||||||||    
T  205123 tttcaacccttgaactttttctaggagtaggacattgtgtatttgtttctccattagtactcggagttttgagtggatagcaaatctcaaccgaagttac 205024  T
Q  363 atcaaatataataacattaaactttgaattcccttc 398  Q
    ||||||||||| |||| ||||||||||||| |||||    
T  205023 atcaaatataacaacactaaactttgaatttccttc 204988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 310 - 397
Target Start/End: Original strand, 198274 - 198361
Alignment:
Q  310 tctccactagtacttggagtttttaatggatagcaaatctcaacagaagttacatcaaatataataacattaaactttgaattccctt 397  Q
    |||||| |||||||||||||||| |||| |||  |||||||||||||||||  |||| |||||| |||||||||||||||||||||||    
T  198274 tctccattagtacttggagttttgaatgaataagaaatctcaacagaagttgtatcatatataacaacattaaactttgaattccctt 198361  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 402
Target Start/End: Original strand, 226108 - 226208
Alignment:
Q  302 tgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttacatcaaatataataacattaaactttgaattcccttcata 401  Q
    |||||| ||||||| |||| ||  ||||||  ||||||||  |||||||||||||||||  |||  |||||| |||||| ||||||||||||||||||||    
T  226108 tgtttggttctccattagtcctccgagtttggaatggataagaaatctcaacagaagttctatcgtatataacaacattgaactttgaattcccttcata 226207  T
Q  402 t 402  Q
    |    
T  226208 t 226208  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 398
Target Start/End: Original strand, 211665 - 211761
Alignment:
Q  302 tgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttacatcaaatataataacattaaactttgaattcccttc 398  Q
    |||||| ||||||| |||| ||  ||||||  ||||||||  |||||||||||||||||  |||  |||||| |||||| |||||||||||||||||    
T  211665 tgtttgcttctccattagtcctccgagtttggaatggataagaaatctcaacagaagttgtatcgtatataacaacattgaactttgaattcccttc 211761  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 216723 - 216774
Alignment:
Q  76 aacatttcgtttcagatgctttgatgcaaaatcagcattaatatactgcaca 127  Q
    ||||||| | |||||||||||||| |||||||||||||||| ||||||||||    
T  216723 aacatttggattcagatgctttgaagcaaaatcagcattaacatactgcaca 216774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 263 - 398
Target Start/End: Original strand, 6903370 - 6903505
Alignment:
Q  263 tttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttac 362  Q
    ||||||||||||| |||||  ||||  ||||||| |  || |||||||||||| ||||||| |||||||| | |||||||||||||||||| ||||||||    
T  6903370 tttcaaccctggaactttttctaggagtaggacattgtgtatttgtttctccattagtactcggagttttgagtggatagcaaatctcaaccgaagttac 6903469  T
Q  363 atcaaatataataacattaaactttgaattcccttc 398  Q
    |||||||||||||||| ||||||||||||| |||||    
T  6903470 atcaaatataataacactaaactttgaatttccttc 6903505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 6904803 - 6904866
Alignment:
Q  310 tctccactagtacttggagtttttaatggatagcaaatctcaacagaagttacatcaaatataa 373  Q
    |||||| |||||||||||||||| ||||||||  ||||||||||| |||||  |||| ||||||    
T  6904803 tctccattagtacttggagttttgaatggataagaaatctcaacaaaagttggatcatatataa 6904866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 263 - 402
Target Start/End: Original strand, 29838223 - 29838362
Alignment:
Q  263 tttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttac 362  Q
    |||||||| ||||||||||  |||  |||||| | || || |||| ||||||| |||||||||||||||  || |||||| |||| |||||||||||| |    
T  29838223 tttcaaccttggacctttttctagaactaggataatttgtttttggttctccattagtacttggagtttcgaaaggataggaaatttcaacagaagttgc 29838322  T
Q  363 atcaaatataataacattaaactttgaattcccttcatat 402  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  29838323 atcaaatataataacactaaactttgaattcccttcatat 29838362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 289 - 401
Target Start/End: Original strand, 3808344 - 3808457
Alignment:
Q  289 ctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttacatcaaatataataacattaaacttt- 387  Q
    |||||| |||| ||||||| ||||| | |||||||||||||||| || |||||||||||| ||||||||||||| ||||||||||||||| ||||||||     
T  3808344 ctaggatactttgtgtttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaactttg 3808443  T
Q  388 gaattcccttcata 401  Q
    ||||| ||||||||    
T  3808444 gaatttccttcata 3808457  T

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