View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14951_high_1 (Length: 427)
Name: NF14951_high_1
Description: NF14951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14951_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 47124329 - 47123918
Alignment:
| Q |
1 |
cctcttcaccccacctttctctagtgccaaacccaatgaacatgtctcagtaccatggaaacaatcacccacattgtccttcaccaatccaaaccttttc |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47124329 |
cctcttcaccccacctttctttagtgccaaacccaatgaacatgtctcagtaccatggaaacaatcacccacattgtccttcaccaatccaaaccttttc |
47124230 |
T |
|
| Q |
101 |
aagcttacaatttcaagtaaagtcaaaacagcagctgttactgaggaagcaacagaagcaccagttggcttcaccccacctgagttagacccaaacactc |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47124229 |
aagcttacaatttcaagtaacatcaaaacagcagctgttactgaggaagcaacagaagcaccagttggcttcaccccacctgagttagacccaaacactc |
47124130 |
T |
|
| Q |
201 |
cctccccaattttcagtggtaacactggactggaggccttttacgcaaggcccaagttgaagaatttcatgtgatcacatgggattcaccaaaagaacaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47124129 |
cctccccaattttcagtggtaacactggactggaggccttttacgcaaggcccaagttgaagaatttcatgtgatcacatgggattcaccaaaagaacaa |
47124030 |
T |
|
| Q |
301 |
atttttgaaatagcaaatggtggtgcagccatcatgagggaaggtcccaatcttctcaaattagcaaggaaagaacaatgtttggctcttggaactaggt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47124029 |
atttttgaaatagcaaatggtggtgcagccatcatgagggaaggtcccaatcttctcaaattagcaaggaaagaacaatgtttggctcttggaactaggt |
47123930 |
T |
|
| Q |
401 |
tgaggtcaaagt |
412 |
Q |
| |
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| T |
47123929 |
tgaggtcaaagt |
47123918 |
T |
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Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 241 - 412
Target Start/End: Original strand, 783125 - 783296
Alignment:
| Q |
241 |
ttacgcaaggcccaagttgaagaatttcatgtgatcacatgggattcaccaaaagaacaaatttttgaaatagcaaatggtggtgcagccatcatgaggg |
340 |
Q |
| |
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||||| ||||| |||||||||||||| |||||||||||||||| ||||| || |||||||| ||||| || ||| ||||||||||||||| ||||| | |
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| T |
783125 |
ttacgtaaggcacaagttgaagaattctatgtgatcacatgggagtcacctaaggaacaaatctttgagatgccaactggtggtgcagccataatgagag |
783224 |
T |
|
| Q |
341 |
aaggtcccaatcttctcaaattagcaaggaaagaacaatgtttggctcttggaactaggttgaggtcaaagt |
412 |
Q |
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||||||| || ||||| || ||||||||||||||||| ||||||||| | |||| ||| || ||||| |||| |
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| T |
783225 |
aaggtcctaaccttcttaagttagcaaggaaagaacagtgtttggctttaggaaatagattaaggtctaagt |
783296 |
T |
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