View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14951_high_12 (Length: 210)
Name: NF14951_high_12
Description: NF14951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14951_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 26028277 - 26028471
Alignment:
| Q |
1 |
tcagatgtaattttaaaactgcagaatcaattccattatgtgaaaagaaataaaatagatccaaaagggctgaatcatgtatattgtatacaacctttat |
100 |
Q |
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| T |
26028277 |
tcagatgtaattttaaaactgcagaatcaattccattatgtgaaaagaaataaaatagatccaaaagggctgaatcatgtatattgtatacaacctttat |
26028376 |
T |
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| Q |
101 |
tcttttatttccattgtgttctttttggataagataaaatgaaaaatgctaataatgatatgaaaccattcctttctattttgaagctgcctttg |
195 |
Q |
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| T |
26028377 |
tcttttatttccattgtgttctttttggataagataaaatgaaaaatgctaataatgatatgaaaccattcctttctattttgaagctgcctttg |
26028471 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 8357351 - 8357388
Alignment:
| Q |
32 |
tccattatgtgaaaagaaataaaatagatccaaaaggg |
69 |
Q |
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| T |
8357351 |
tccattctttgaaaagaaataaaatagatccaaaaggg |
8357388 |
T |
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