View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14951_high_6 (Length: 256)
Name: NF14951_high_6
Description: NF14951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14951_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 26761586 - 26761470
Alignment:
| Q |
21 |
gggatatagagaaaggtgaaagctcatgagagttgacagggaagaagacaaatgaaaagataatcaagtgtatttgatctatggtgtgtttaaccaatct |
120 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26761586 |
gggatatagagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctatggtgtgtttaaccaatct |
26761487 |
T |
|
| Q |
121 |
aacggttaggaaaggtc |
137 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
26761486 |
aacggttaggaaaggtc |
26761470 |
T |
|
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Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 28 - 144
Target Start/End: Complemental strand, 34053308 - 34053192
Alignment:
| Q |
28 |
agagaaaggtgaaagctcatgagagttgacagggaagaagacaaatgaaaagataatcaagtgtatttgatctatggtgtgtttaaccaatctaacggtt |
127 |
Q |
| |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34053308 |
agagaaaggtaaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctatggtgtgtttaaccaatctaacggtt |
34053209 |
T |
|
| Q |
128 |
aggaaaggtcagaaggt |
144 |
Q |
| |
|
|||||| |||||||||| |
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|
| T |
34053208 |
aggaaatgtcagaaggt |
34053192 |
T |
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Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 28 - 144
Target Start/End: Original strand, 43070071 - 43070187
Alignment:
| Q |
28 |
agagaaaggtgaaagctcatgagagttgacagggaagaagacaaatgaaaagataatcaagtgtatttgatctatggtgtgtttaaccaatctaacggtt |
127 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43070071 |
agagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctatgatgtgtttaaccaatctaacggtt |
43070170 |
T |
|
| Q |
128 |
aggaaaggtcagaaggt |
144 |
Q |
| |
|
|||||||||| |||||| |
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| T |
43070171 |
aggaaaggtccgaaggt |
43070187 |
T |
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Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 28 - 145
Target Start/End: Original strand, 11882887 - 11883004
Alignment:
| Q |
28 |
agagaaaggtgaaagctcatgagagttgacagggaagaagacaaatgaaaagataatcaagtgtatttgatctatggtgtgtttaaccaatctaacggtt |
127 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
11882887 |
agagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctatggtgtgttcaaccaatctaacggtt |
11882986 |
T |
|
| Q |
128 |
aggaaaggtcagaaggtc |
145 |
Q |
| |
|
|||||| ||| ||||||| |
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|
| T |
11882987 |
aggaaaagtccgaaggtc |
11883004 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 30 - 137
Target Start/End: Original strand, 33018530 - 33018637
Alignment:
| Q |
30 |
agaaaggtgaaagctcatgagagttgacagggaagaagacaaatgaaaagataatcaagtgtatttgatctatggtgtgtttaaccaatctaacggttag |
129 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| || | |
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|
| T |
33018530 |
agaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctatgatgtgttcaaccaatctaacgattgg |
33018629 |
T |
|
| Q |
130 |
gaaaggtc |
137 |
Q |
| |
|
||||||| |
|
|
| T |
33018630 |
aaaaggtc |
33018637 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 33432926 - 33432813
Alignment:
| Q |
21 |
gggatatagagaaaggtgaaagctcatgagagttgacagggaagaagacaaatgaaaagataatcaagtgtatttgatctatggtgtgtttaaccaatct |
120 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||| |
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|
| T |
33432926 |
gggatatagagaaaggggaaagctcatgagagttgagagggaagaagacaaatgaaaagataattcagtgtatttaatctatggtgtgttcaaccaatct |
33432827 |
T |
|
| Q |
121 |
aacggttaggaaag |
134 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
33432826 |
aactattaggaaag |
33432813 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 35347163 - 35347273
Alignment:
| Q |
28 |
agagaaaggtgaaagctcatgagagttgacagggaagaagacaaatgaaaagataatcaagtgtatttgatctatggtgtgtttaaccaatctaacggtt |
127 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||| ||| |||||||| |
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|
| T |
35347163 |
agagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaaaataatcaagtgtattcgatctatgatgtgtttaactaatttaacggtt |
35347262 |
T |
|
| Q |
128 |
aggaaaggtca |
138 |
Q |
| |
|
|| ||| |||| |
|
|
| T |
35347263 |
agaaaaagtca |
35347273 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 47116459 - 47116524
Alignment:
| Q |
191 |
tttgaattatttgtacaaaagttacgtgattttataaaaggatgtcataacttatttttatttgtt |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
47116459 |
tttgaattatttgtacaaaagttacgtgattttataaaaggatgtaataacttatttttatttgtt |
47116524 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 12009113 - 12008998
Alignment:
| Q |
27 |
tagagaaaggtgaaagctcatgagagttgacagggaagaagacaaatgaaaagataatcaagtgtatttgatctatggtgtgtttaaccaatctaacggt |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12009113 |
tagagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaatataatcaagtgtatttgatctatggtgtgtttaaccaatctaacggt |
12009014 |
T |
|
| Q |
127 |
taggaaaggtcagaag |
142 |
Q |
| |
|
||| ||| |||||||| |
|
|
| T |
12009013 |
tagaaaatgtcagaag |
12008998 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 28 - 145
Target Start/End: Original strand, 47669131 - 47669248
Alignment:
| Q |
28 |
agagaaaggtgaaagctcatgagagttgacagggaagaagacaaatgaaaagataatcaagtgtatttgatctatggtgtgtttaaccaatctaacggtt |
127 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
47669131 |
agagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctctggtgtgtttaaccaatctaacggtt |
47669230 |
T |
|
| Q |
128 |
aggaaaggtcagaaggtc |
145 |
Q |
| |
|
|||||| || |||||||| |
|
|
| T |
47669231 |
aggaaatgtgagaaggtc |
47669248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 24 - 133
Target Start/End: Complemental strand, 51985999 - 51985890
Alignment:
| Q |
24 |
atatagagaaaggtgaaagctcatgagagttgacagggaagaagacaaatgaaaagataatcaagtgtatttgatctatggtgtgtttaaccaatctaac |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
51985999 |
atatagagaaaggtgaaagctcatgagagttgagaggaaagaagacaaatgaaaagataatcaagtgtatttgatctatggtatgtttaaccaatctaac |
51985900 |
T |
|
| Q |
124 |
ggttaggaaa |
133 |
Q |
| |
|
|||||||||| |
|
|
| T |
51985899 |
ggttaggaaa |
51985890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 47124806 - 47124691
Alignment:
| Q |
27 |
tagagaaaggtgaaagctcatgagagttgacagggaagaagacaaatgaaaagataatcaagtgtatttgatctatggtgtgtttaaccaatctaacggt |
126 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47124806 |
tagagaaaggtaaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaggtgtatttgatctatggtgtgttcaaccaatctaacggt |
47124707 |
T |
|
| Q |
127 |
taggaaaggtcagaag |
142 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
47124706 |
taggaaaggtctgaag |
47124691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 27 - 138
Target Start/End: Original strand, 7298553 - 7298664
Alignment:
| Q |
27 |
tagagaaaggtgaaagctcatgagagttgacagggaagaagacaaatgaaaagataatcaagtgtatttgatctatggtgtgtttaaccaatctaacggt |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7298553 |
tagagaaaggtgaaagctcatgagagttgagaaggaagaagacaaaggaaaatataattaagtgtatttgatctatggtgtgtttaaccaatctaacggt |
7298652 |
T |
|
| Q |
127 |
taggaaaggtca |
138 |
Q |
| |
|
||||||| |||| |
|
|
| T |
7298653 |
taggaaatgtca |
7298664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 27 - 145
Target Start/End: Original strand, 6535166 - 6535284
Alignment:
| Q |
27 |
tagagaaaggtgaaagctcatgagagttgacagggaagaagacaaatgaaaagataatcaagtgtatttgatctatggtgtgtttaaccaatctaacggt |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||| || |||||||||| | |
|
|
| T |
6535166 |
tagagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttgatctgtggtgtgttcaatcaatctaacgat |
6535265 |
T |
|
| Q |
127 |
taggaaaggtcagaaggtc |
145 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
6535266 |
taggaaaggtccgaaggtc |
6535284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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