View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14951_low_8 (Length: 248)
Name: NF14951_low_8
Description: NF14951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14951_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 131 - 241
Target Start/End: Original strand, 26028604 - 26028714
Alignment:
| Q |
131 |
gaggaacttgatccgcgaggcaacagcatttttgttggatgtgctaaagccaaacctacctgaacatggatatcttcaatcaaaggttcttatattttat |
230 |
Q |
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| T |
26028604 |
gaggaacttgatccgcgaggcaacagcatttttgttggatgtgctaaagccaaacctacctgaacatggatatcttcaatcaaaggttcttatattttat |
26028703 |
T |
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| Q |
231 |
gtgatgatgtc |
241 |
Q |
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|||||| |||| |
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| T |
26028704 |
gtgatgttgtc |
26028714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 26028474 - 26028542
Alignment:
| Q |
1 |
aacctcttggtttagccaacatactttcctctaatttcaagaactgcgaattatttgttaaatcaccaa |
69 |
Q |
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| T |
26028474 |
aacctcttggtttagccaacatactttcctctaatttcaagaactgcgaattatttgttaaatcaccaa |
26028542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 228
Target Start/End: Complemental strand, 30500337 - 30500248
Alignment:
| Q |
139 |
tgatccgcgaggcaacagcatttttgttggatgtgctaaagccaaacctacctgaacatggatatcttcaatcaaaggttcttatatttt |
228 |
Q |
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| T |
30500337 |
tgatccgtgaggcaactacctttttgttggaactgctgaagccagacctacctgaacatggacatcttcaaacaaaggttcctttatttt |
30500248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 228
Target Start/End: Complemental strand, 30540680 - 30540591
Alignment:
| Q |
139 |
tgatccgcgaggcaacagcatttttgttggatgtgctaaagccaaacctacctgaacatggatatcttcaatcaaaggttcttatatttt |
228 |
Q |
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| T |
30540680 |
tgatccgtgaggcaactacctttttgttggaactgctgaagccagacctacctgaacatggacatcttcaaacaaaggttcctttatttt |
30540591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 35738110 - 35738189
Alignment:
| Q |
139 |
tgatccgcgaggcaacagcatttttgttggatgtgctaaagccaaacctacctgaacatggatatcttcaatcaaaggtt |
218 |
Q |
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||||||| ||||||||||| ||| | ||||||| |||||||||| ||||||||||||||| |||||| |||||||| |
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| T |
35738110 |
tgatccgtgaggcaacagcttttctcctggatgttttaaagccaaatttacctgaacatggattccttcaaacaaaggtt |
35738189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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