View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14952_high_3 (Length: 542)

Name: NF14952_high_3
Description: NF14952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14952_high_3
NF14952_high_3
[»] chr5 (24 HSPs)
chr5 (170-542)||(1163360-1163735)
chr5 (170-483)||(3299652-3299965)
chr5 (170-483)||(3392545-3392858)
chr5 (238-540)||(1850006-1850293)
chr5 (18-112)||(1163208-1163302)
chr5 (185-483)||(40418417-40418712)
chr5 (202-446)||(39879988-39880232)
chr5 (179-446)||(38987873-38988140)
chr5 (34-98)||(3300024-3300088)
chr5 (34-98)||(3392917-3392981)
chr5 (356-446)||(39726592-39726682)
chr5 (44-98)||(1850390-1850444)
chr5 (368-428)||(39169041-39169101)
chr5 (486-542)||(40418319-40418375)
chr5 (487-542)||(39879850-39879905)
chr5 (497-542)||(3299572-3299617)
chr5 (497-542)||(3392465-3392510)
chr5 (486-541)||(38987742-38987797)
chr5 (18-87)||(38988246-38988324)
chr5 (487-541)||(39726455-39726509)
chr5 (179-283)||(39726755-39726863)
chr5 (21-87)||(40418824-40418899)
chr5 (380-422)||(39400042-39400084)
chr5 (51-87)||(39880369-39880405)
[»] chr4 (7 HSPs)
chr4 (363-483)||(25912122-25912239)
chr4 (179-283)||(25911942-25912046)
chr4 (179-287)||(44444435-44444543)
chr4 (497-542)||(25912295-25912340)
chr4 (373-428)||(44444614-44444669)
chr4 (18-87)||(25911743-25911821)
chr4 (500-542)||(44444772-44444814)


Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 170 - 542
Target Start/End: Original strand, 1163360 - 1163735
Alignment:
Q  170 gcatcttccttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatc---catcaagcaaatcctcc 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||   |||||||||||||||||    
T  1163360 gcatcttccttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatcatccatcaagcaaatcctcc 1163459  T
Q  267 aatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaagaggagtt 366  Q
    |||||| ||||||||||   |||||||||| ||| |  || | || |||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  1163460 aatggaaaaaaaggtctataaaagggggatctgaagagtgggccagatggatggcagtaggttggatttcggtagattgctctttggtcgaagaggagtt 1163559  T
Q  367 tagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaactaat 466  Q
    ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163560 tagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaactaat 1163659  T
Q  467 cttggtaatcaaaatgggatctccttcaggcaggtcataaccaagagcatgttcaccgggttttaaaatacgacca 542  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1163660 cttggtaatcaaaatgggatctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgacca 1163735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 170 - 483
Target Start/End: Complemental strand, 3299965 - 3299652
Alignment:
Q  170 gcatcttccttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaat 269  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299965 gcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaat 3299866  T
Q  270 ggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaagaggagtttag 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299865 ggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaagaggagtttag 3299766  T
Q  370 tgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaactaatctt 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||| ||||||| ||    
T  3299765 tgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcggcataactaatttt 3299666  T
Q  470 ggtaatcaaaatgg 483  Q
    ||| ||||||||||    
T  3299665 ggtgatcaaaatgg 3299652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 170 - 483
Target Start/End: Complemental strand, 3392858 - 3392545
Alignment:
Q  170 gcatcttccttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaat 269  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392858 gcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaat 3392759  T
Q  270 ggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaagaggagtttag 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392758 ggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaagaggagtttag 3392659  T
Q  370 tgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaactaatctt 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||| ||||||| ||    
T  3392658 tgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcggcataactaatttt 3392559  T
Q  470 ggtaatcaaaatgg 483  Q
    ||| ||||||||||    
T  3392558 ggtgatcaaaatgg 3392545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 238 - 540
Target Start/End: Complemental strand, 1850293 - 1850006
Alignment:
Q  238 aagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcg 337  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| || | || ||||||||||||||||| |||||||    
T  1850293 aagtagatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaaaggggatctgatgggtgggccagatggatggcagttggttggatttcg 1850194  T
Q  338 gtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacaggaacaact 437  Q
    ||               ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1850193 gt---------------cgaagaggagtttagggtcttgttgtaaatcttttaagaagagttgataatcagattcccacttatcctgaacaggaataact 1850109  T
Q  438 ctaccattctcctctttagcaaaactaatcttggtaatcaaaatgggatctccttcaggcaggtcataaccaagagcatgttcaccgggttttaaaatac 537  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  1850108 ctaccattctcctctttagcaaaactaatcttggtaatcaaaatgggatctccttcaggcaggtcataaccaagagcatggtcaccaggttttaaaatac 1850009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 1163208 - 1163302
Alignment:
Q  18 tgggaagcacgatcaacacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacaaagtaagttgttcttgttatcg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163208 tgggaagcacgatcaacacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacaaagtaagttgttcttgttatcg 1163302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 185 - 483
Target Start/End: Complemental strand, 40418712 - 40418417
Alignment:
Q  185 ttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtctt 284  Q
    ||||||||||||  |||||||||| || | ||||||| |||||||||||| |||| | |||||||| |||||||| ||||||||||||  |||||||||     
T  40418712 ttgttattggaacaaacaaaacattaacaaaagtgatttttgtttaagctagtaactagatcatccgtcaagcaagtcctccaatggaacaaaaggtctg 40418613  T
Q  285 ctaaagggggattt-gatggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtaga 383  Q
     ||  ||||||||  || ||     ||| |||  | ||  |||||| ||| |||||||  |||||||  || ||||||||||||||||||||||||||||    
T  40418612 gtag-gggggattacgaagggcccatcatatgtgtagcttttggtttgatctcggtaggctgctcttacgttgaagaggagtttagtgtcttgttgtaga 40418514  T
Q  384 tcttttaagaagagttgataatcagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaactaatcttggtaatcaaaatgg 483  Q
    || || |||||||||||||||||||||||||||||||| |||| || |||||||||||||||   |||||  ||| ||||||||||||| ||||||||||    
T  40418513 tcattgaagaagagttgataatcagattcccacttatcatgaagagcaacaactctaccatt---ctcttcggcataactaatcttggtgatcaaaatgg 40418417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 202 - 446
Target Start/End: Complemental strand, 39880232 - 39879988
Alignment:
Q  202 aaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatt-tga 300  Q
    |||||||||| | ||||||| |||||||||||| |||| | |||||||| |||||||| |||||||||||| ||||||||||  ||  |||||||| |||    
T  39880232 aaaacatcaacaaaagtgatttttgtttaagctagtaactagatcatccgtcaagcaagtcctccaatggaaaaaaaggtctggtag-gggggattctga 39880134  T
Q  301 tggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttg 400  Q
     ||     ||| |||  | ||  |||||| ||| |||||||  |||||||  |  ||||| ||||||||||| |||||||||||| || |||||||||||    
T  39880133 agggcccatcatatgtgtagcttttggtttgatctcggtaggctgctcttacgctgaagatgagtttagtgttttgttgtagatcattgaagaagagttg 39880034  T
Q  401 ataatcagattcccacttatcctgaacaggaacaactctaccattc 446  Q
    |||||||||||||||||||||||  |||| ||||||||||||||||    
T  39880033 ataatcagattcccacttatccttgacagcaacaactctaccattc 39879988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 179 - 446
Target Start/End: Complemental strand, 38988140 - 38987873
Alignment:
Q  179 ttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaa 278  Q
    ||||| ||||||||||||  ||||||||||||| | ||||||| |||||||||||| || | | |||||||| |||||||| ||||||||||||| ||||    
T  38988140 ttgttgttgttattggaacaaacaaaacatcaacaaaagtgatttttgtttaagctagtgactagatcatccgtcaagcaagtcctccaatggatcaaaa 38988041  T
Q  279 ggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaagaggagtttagtgtcttgtt 378  Q
    |||||  ||  ||||  |  || ||    |||| |||  | |  |||| || |||||||||||  |||| ||   | |||||| |||| || ||||||||    
T  38988040 ggtctggtaggggggtctacgaagggcccgtcatatgtgtagtggttgtttggatttcggtaggctgctgttatcttgaagagtagttgagggtcttgtt 38987941  T
Q  379 gtagatcttttaagaagagttgataatcagattcccacttatcctgaacaggaacaactctaccattc 446  Q
    ||||||| || ||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||    
T  38987940 gtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccattc 38987873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 3300088 - 3300024
Alignment:
Q  34 cacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacaaagtaagt 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3300088 cacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagt 3300024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 3392981 - 3392917
Alignment:
Q  34 cacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacaaagtaagt 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3392981 cacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagt 3392917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 356 - 446
Target Start/End: Complemental strand, 39726682 - 39726592
Alignment:
Q  356 gaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacaggaacaactctaccattc 446  Q
    |||||| |||| || ||||||||||||||| || ||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||    
T  39726682 gaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccattc 39726592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 1850444 - 1850390
Alignment:
Q  44 ttgttctaataaacataaatatcaaacagaaattgcaaattgcaacaaagtaagt 98  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1850444 ttgttctaataaacataaatatcaaacagaaattgtaaattgcaacaaagtaagt 1850390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 368 - 428
Target Start/End: Complemental strand, 39169101 - 39169041
Alignment:
Q  368 agtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaaca 428  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||    
T  39169101 agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttaccctcaaca 39169041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 486 - 542
Target Start/End: Complemental strand, 40418375 - 40418319
Alignment:
Q  486 tctccttcaggcaggtcataaccaagagcatgttcaccgggttttaaaatacgacca 542  Q
    |||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  40418375 tctcctccagacaggtcataaccaagagcatggtcaccgggttttaaaatacgacca 40418319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 487 - 542
Target Start/End: Complemental strand, 39879905 - 39879850
Alignment:
Q  487 ctccttcaggcaggtcataaccaagagcatgttcaccgggttttaaaatacgacca 542  Q
    ||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  39879905 ctcctccagacaggtcataaccaagagcatggtcaccgggttttaaaatacgacca 39879850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 497 - 542
Target Start/End: Complemental strand, 3299617 - 3299572
Alignment:
Q  497 caggtcataaccaagagcatgttcaccgggttttaaaatacgacca 542  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  3299617 caggtcataaccaagagcatggtcaccgggttttaaaatacgacca 3299572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 497 - 542
Target Start/End: Complemental strand, 3392510 - 3392465
Alignment:
Q  497 caggtcataaccaagagcatgttcaccgggttttaaaatacgacca 542  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  3392510 caggtcataaccaagagcatggtcaccgggttttaaaatacgacca 3392465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 486 - 541
Target Start/End: Complemental strand, 38987797 - 38987742
Alignment:
Q  486 tctccttcaggcaggtcataaccaagagcatgttcaccgggttttaaaatacgacc 541  Q
    |||||| ||| ||||||||||||||||||||| |||||||||||||| ||||||||    
T  38987797 tctcctccagacaggtcataaccaagagcatggtcaccgggttttaagatacgacc 38987742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 38988324 - 38988246
Alignment:
Q  18 tgggaagcacgatcaacacacataacttgttct---------aataaacataaatatcaaacagaaattgcaaattgca 87  Q
    ||||||||| |||||||||||||||||||||||         |||||||||||||||||||||||||||||||| ||||    
T  38988324 tgggaagcaagatcaacacacataacttgttcttgtaatcggaataaacataaatatcaaacagaaattgcaaactgca 38988246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 487 - 541
Target Start/End: Complemental strand, 39726509 - 39726455
Alignment:
Q  487 ctccttcaggcaggtcataaccaagagcatgttcaccgggttttaaaatacgacc 541  Q
    ||||| ||| ||||||||||||||||||||| |||||||||||||| ||||||||    
T  39726509 ctcctccagacaggtcataaccaagagcatggtcaccgggttttaagatacgacc 39726455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 283
Target Start/End: Complemental strand, 39726863 - 39726755
Alignment:
Q  179 ttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtgg----atcatccatcaagcaaatcctccaatggata 274  Q
    ||||| || |||||||||  ||||||||||||| | | ||||| |||||||||||| |||| | |    ||||||| |||||||| |||||||||||||     
T  39726863 ttgttgttattattggaacaaacaaaacatcaacaaaggtgatttttgtttaagctagtaactagctagatcatccgtcaagcaagtcctccaatggatc 39726764  T
Q  275 aaaaggtct 283  Q
    |||||||||    
T  39726763 aaaaggtct 39726755  T

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Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 40418899 - 40418824
Alignment:
Q  21 gaagcacgatcaacacacataacttgttct---------aataaacataaatatcaaacagaaattgcaaattgca 87  Q
    |||||||||||||||||| |||||||||||         |||||||||||||||||||||||||||||||| ||||    
T  40418899 gaagcacgatcaacacacgtaacttgttcttgtaatcggaataaacataaatatcaaacagaaattgcaaactgca 40418824  T

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Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 422
Target Start/End: Complemental strand, 39400084 - 39400042
Alignment:
Q  380 tagatcttttaagaagagttgataatcagattcccacttatcc 422  Q
    |||||||| ||||||||||||||||||||||| ||||||||||    
T  39400084 tagatcttctaagaagagttgataatcagattgccacttatcc 39400042  T

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Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 39880405 - 39880369
Alignment:
Q  51 aataaacataaatatcaaacagaaattgcaaattgca 87  Q
    |||||||||||||||||||||||||||||||| ||||    
T  39880405 aataaacataaatatcaaacagaaattgcaaactgca 39880369  T

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Target: chr4 (Bit Score: 71; Significance: 7e-32; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 363 - 483
Target Start/End: Original strand, 25912122 - 25912239
Alignment:
Q  363 agtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaac 462  Q
    ||||||| |||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||   |||||  ||| |||    
T  25912122 agtttagggtcttgctgtagataatttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccatt---ctcttcggcataac 25912218  T
Q  463 taatcttggtaatcaaaatgg 483  Q
    |||||||||| ||||||||||    
T  25912219 taatcttggtgatcaaaatgg 25912239  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 179 - 283
Target Start/End: Original strand, 25911942 - 25912046
Alignment:
Q  179 ttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaa 278  Q
    ||||| || |||||||||  ||||||||||||| | ||||||| |||||||||||| |||| | |||||||| |||||||| ||||||||||||  ||||    
T  25911942 ttgttgttattattggaacaaacaaaacatcaacaaaagtgatttttgtttaagctagtaactagatcatccgtcaagcaagtcctccaatggaacaaaa 25912041  T
Q  279 ggtct 283  Q
    |||||    
T  25912042 ggtct 25912046  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 179 - 287
Target Start/End: Original strand, 44444435 - 44444543
Alignment:
Q  179 ttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaa 278  Q
    ||||||| |||||||||   ||||||||||||| | ||||||| ||||||||||||||||| | |||||||| |||||||| ||||| ||||||  ||||    
T  44444435 ttgttttcgttattggagtaaacaaaacatcaacaaaagtgatttttgtttaagcttgtaactagatcatccgtcaagcaagtcctctaatggaacaaaa 44444534  T
Q  279 ggtcttcta 287  Q
    | |||||||    
T  44444535 gatcttcta 44444543  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 497 - 542
Target Start/End: Original strand, 25912295 - 25912340
Alignment:
Q  497 caggtcataaccaagagcatgttcaccgggttttaaaatacgacca 542  Q
    ||||||||||||||||||||| ||| ||||||||| ||||||||||    
T  25912295 caggtcataaccaagagcatggtcatcgggttttagaatacgacca 25912340  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 428
Target Start/End: Original strand, 44444614 - 44444669
Alignment:
Q  373 cttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaaca 428  Q
    |||||| ||||| ||||||||| |||| ||||||||||||| | ||||||||||||    
T  44444614 cttgttttagatattttaagaaaagtttataatcagattccaatttatcctgaaca 44444669  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 25911743 - 25911821
Alignment:
Q  18 tgggaagcacgatcaacacacataacttgttct---------aataaacataaatatcaaacagaaattgcaaattgca 87  Q
    ||||||||| ||||||||||| |||||||||||         ||||||||||| |||||||||||||||||||| ||||    
T  25911743 tgggaagcatgatcaacacacgtaacttgttcttgtaatcggaataaacataagtatcaaacagaaattgcaaactgca 25911821  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 500 - 542
Target Start/End: Original strand, 44444772 - 44444814
Alignment:
Q  500 gtcataaccaagagcatgttcaccgggttttaaaatacgacca 542  Q
    |||||||||||||||||  ||||| ||||||||||||||||||    
T  44444772 gtcataaccaagagcatagtcaccaggttttaaaatacgacca 44444814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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