View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14952_low_10 (Length: 289)
Name: NF14952_low_10
Description: NF14952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14952_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 5388148 - 5387878
Alignment:
| Q |
1 |
ttccattgcttgatgaatgatcagccatatcaccgacaaataattaggatgaagcaaagaaatgaagtgaaatgaatgctaaactttgtcaaagaaacta |
100 |
Q |
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| T |
5388148 |
ttccattgcttgatgaatgatcagccatatcaccgacaaataattaggatgaagcaaagaaatgaagtgaaatgaatgctaaactttgtcaaagaaacta |
5388049 |
T |
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| Q |
101 |
agaaatgaagtatttagttaagagacctgccccaatttatgggcactcaaaagtcttataaagaagaaggatgggataggagaatagagagattcagaat |
200 |
Q |
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| T |
5388048 |
agaaatgaagtatttagttaagagacctgccccaatttatgggcactcaaaagtcttataaagaagaaggatgggataggagaatagagagattcagaat |
5387949 |
T |
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| Q |
201 |
ttgacttctttacaatttccacagatggaaaataaattggattaaattaccgattttttgtgtcaacgtat |
271 |
Q |
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| T |
5387948 |
ttgacttcttcacaatttccacagatggaaaataaattggattaaattaccgattttttgtgtcaacgtat |
5387878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 5401958 - 5401756
Alignment:
| Q |
1 |
ttccattgcttgatgaatgatcagccatatcaccgacaaataattaggatgaagcaaagaaatgaagtgaaatg-aatgctaaactttgtcaaagaaact |
99 |
Q |
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||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |||||||||||||||||| | |||||| ||||||| ||| | || |
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| T |
5401958 |
ttccattgcttgatgaaggatcagccatatcaccgacaaagaataaggatgaaacaaagaaatgaagtgaaaagaaatgctctactttgttaaattagct |
5401859 |
T |
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| Q |
100 |
aagaaatgaagtatttagttaagagacctgccccaatttatgggcactcaaaagtcttataaagaagaaggatgggataggagaata-gagagattcaga |
198 |
Q |
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| T |
5401858 |
aagaaatgaagtattcaattaagagagcttccccaatttattggcactcaaaagtcttataaagaggaagga-gtgatgggagaatatgagagattcaga |
5401760 |
T |
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| Q |
199 |
attt |
202 |
Q |
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|||| |
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| T |
5401759 |
attt |
5401756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 5401760 - 5401710
Alignment:
| Q |
214 |
aatttccacagatggaaaataaattggattaaattaccgattttttgtgtc |
264 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||| |||| |||| |
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| T |
5401760 |
aatttccacatatggaaaataaattggatttaattaccgatcttttctgtc |
5401710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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