View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14952_low_13 (Length: 246)
Name: NF14952_low_13
Description: NF14952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14952_low_13 |
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| [»] scaffold0017 (1 HSPs) |
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| [»] scaffold0079 (1 HSPs) |
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Alignment Details
Target: scaffold0017 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 22 - 234
Target Start/End: Complemental strand, 36451 - 36239
Alignment:
| Q |
22 |
aaaaccaacaaactcattatgattcatgaatttagattggaaatgcttcaatgatggatagcaaagcattgattttgatgatgttgtaacgagggaatcc |
121 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36451 |
aaaaccaacaaactcattatgatttatgaatttagattggaaatgcttcaatgatggatagcaaagcattgattttgatgatgttgtaacgagggaatcc |
36352 |
T |
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| Q |
122 |
cgtctctttgaataagtatttccagttctcttcagtcctttccttaccaccagagttgtgtgcaaacaatatcatgtcaaatgctatgccaatatcagta |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36351 |
cgtctctttgaataagtatttccagttctcttcagtcctttccttaccaccagagttgtgtgcaaacaatatcatgtcaaatgctatgccaatatcagta |
36252 |
T |
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| Q |
222 |
aatggttcatctc |
234 |
Q |
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||||||||||||| |
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| T |
36251 |
aatggttcatctc |
36239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0079 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 22 - 231
Target Start/End: Original strand, 47587 - 47796
Alignment:
| Q |
22 |
aaaaccaacaaactcattatgattcatgaatttagattggaaatgcttcaatgatggatagcaaagcattgattttgatgatgttgtaacgagggaatcc |
121 |
Q |
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||||||||||||||||| || | |||||||||||||||| ||||| ||||||||| || ||| |||||||||||||||||||||||||||||||||||| |
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| T |
47587 |
aaaaccaacaaactcatcatcttccatgaatttagattgggaatgcctcaatgatgcatggcagagcattgattttgatgatgttgtaacgagggaatcc |
47686 |
T |
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| Q |
122 |
cgtctctttgaataagtatttccagttctcttcagtcctttccttaccaccagagttgtgtgcaaacaatatcatgtcaaatgctatgccaatatcagta |
221 |
Q |
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||||| ||||||| ||||||||||||||||||||| ||||| |||||||||| ||||| |||| ||| ||||||||||||||||| ||| | || ||| |
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| T |
47687 |
tgtctcgttgaataggtatttccagttctcttcagttctttctttaccaccagcattgtgagcaagcaacatcatgtcaaatgctatcccagtgtcggta |
47786 |
T |
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| Q |
222 |
aatggttcat |
231 |
Q |
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|||||||||| |
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| T |
47787 |
aatggttcat |
47796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 22 - 231
Target Start/End: Complemental strand, 16345274 - 16345065
Alignment:
| Q |
22 |
aaaaccaacaaactcattatgattcatgaatttagattggaaatgcttcaatgatggatagcaaagcattgattttgatgatgttgtaacgagggaatcc |
121 |
Q |
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||||||||||||||||| || | |||||||||||||||| ||||| ||||||||| || ||| |||||||||||||||||||||||||||||||||||| |
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| T |
16345274 |
aaaaccaacaaactcatcatcttccatgaatttagattgggaatgcctcaatgatgcatggcagagcattgattttgatgatgttgtaacgagggaatcc |
16345175 |
T |
|
| Q |
122 |
cgtctctttgaataagtatttccagttctcttcagtcctttccttaccaccagagttgtgtgcaaacaatatcatgtcaaatgctatgccaatatcagta |
221 |
Q |
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||||| ||||||| ||||||||||||||||||||| ||||| |||||||||| ||||| |||| ||| ||||||||||||||||| ||| | || ||| |
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| T |
16345174 |
tgtctcgttgaataggtatttccagttctcttcagttctttctttaccaccagcattgtgagcaagcaacatcatgtcaaatgctatcccagtgtcggta |
16345075 |
T |
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| Q |
222 |
aatggttcat |
231 |
Q |
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|||||||||| |
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| T |
16345074 |
aatggttcat |
16345065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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