View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14952_low_14 (Length: 239)
Name: NF14952_low_14
Description: NF14952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14952_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 3620352 - 3620130
Alignment:
| Q |
1 |
ttcggaattacattctccataaagcttgagtaaccttactgacctcaatcattcacaaaacgcacatttaaatagcacaaaaacttttaatttcttcaaa |
100 |
Q |
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||||||||||||||||| ||||||||| |||||||||| |||||||| |||| ||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
3620352 |
ttcggaattacattctctataaagcttaagtaaccttagtgacctcagtcatacacaaaacgcacatttaaatagcacaaaagcttttaatttattcaaa |
3620253 |
T |
|
| Q |
101 |
agtatacccgtatggataaatggtttcataaacgcttattacaataaatacttacgtaaagctaattctataataaaagattnnnnnnngttaaattatt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
3620252 |
agtatacccgtatggataaatggtttcataaacgcttattacgataaatacttatgtaaagctaattctataataaaagattgaaaaaagttaaattatt |
3620153 |
T |
|
| Q |
201 |
ttcataaaaactactctcttcgt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
3620152 |
ttcataaaaactactctcttcgt |
3620130 |
T |
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