View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14952_low_2 (Length: 633)
Name: NF14952_low_2
Description: NF14952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14952_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 1 - 618
Target Start/End: Complemental strand, 48527683 - 48527066
Alignment:
| Q |
1 |
tatgaaatagttttagttgaagctttacgcgaacaatatgacagtcgagctctatgtgtttggttctctccaggaaggatgaattggcagcaatatgtct |
100 |
Q |
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| T |
48527683 |
tatgaaatagttttagttgaagctttacgcgaacaatatgacagtcgagctctatgtgtttggttctctccaggaaggatgaattggcagcaatatgtct |
48527584 |
T |
|
| Q |
101 |
tgcggcagattgattgtcacagtataacatggctggtttgatgaaagtaaatttgaggtcattgagaagatatgttaaccatttgatctcacaaattgtt |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48527583 |
tgcggcggattgattgtcacagtataacatggctggtttgatgaaagtaaatttgaggtcattgagaagatatgttaaccatttgatctcacaaattgtt |
48527484 |
T |
|
| Q |
201 |
gattatatggatcgatagattttgaaattgtaccnnnnnnnnnnaagatttccaacatatgagtgagtcgcctaagaagatgcaaaaataactgattgat |
300 |
Q |
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| T |
48527483 |
gattatatggatcgatagattttgaaattgtaccttttttttttaagatttccagcatatgagtgagtcgcctaagaagatgcaaaaataactgattgat |
48527384 |
T |
|
| Q |
301 |
tttcaagtgtctaggcagcttgatcaatct-----gagtcacaaaatgctttgatctgaatctaagatggaaaaaatattatatttattgtgatggagag |
395 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48527383 |
tttcaagtgtctaggcagcttgatcaatctaatctgagtcacaaaatgctttgatctgaatctaagatggaaaaaatattc-----attgtgatggagag |
48527289 |
T |
|
| Q |
396 |
atttttaggtatagtatttgaatggctgcttgtagatgttgtgctgtactctgatggaacttttttgattaaatactctatcctaagagaccctttatca |
495 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
48527288 |
atttttaggtatagtatttgaatggctgcttgtggatgttgtgctgtactctgatggaacttttttgcttcaatactctatcctaagagaccctttatca |
48527189 |
T |
|
| Q |
496 |
gtatttgctcttaactctaatatatttttcttgcttaaactcagatactttatcctaattaagtgactctttatcagtacttgctcttatctttgatgga |
595 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48527188 |
gtatttgctcttaactctaatatatttttcttgcttaaactcagatactttatcctaattaagtgactctttatcagtacttgctcttatctttgatgga |
48527089 |
T |
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| Q |
596 |
attttcttgcttaaattttagat |
618 |
Q |
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|||||||||||||||||| |||| |
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| T |
48527088 |
attttcttgcttaaatttcagat |
48527066 |
T |
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