View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14952_low_4 (Length: 486)
Name: NF14952_low_4
Description: NF14952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14952_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 1e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 116 - 279
Target Start/End: Complemental strand, 36605917 - 36605754
Alignment:
| Q |
116 |
ctaattcacaaacgactgaactgaatctcaatcaaatagtggaacatcattttgattctacaatctattagttttcattcctcaaattttcccccatttg |
215 |
Q |
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| T |
36605917 |
ctaattgacaaacgactgaactgaatctcaatcaaatagtaaaacatcattttgattctacaatctattagttttcattcctcaaattttcccccatttg |
36605818 |
T |
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| Q |
216 |
cctatattaatttactctattcaattcccaatatatatgtattttaactacctatattaacatg |
279 |
Q |
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| T |
36605817 |
cctatattaatttactctattcaatttacagtatatatgtattttaactacctacattaacatg |
36605754 |
T |
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Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 123 - 243
Target Start/End: Original strand, 32649626 - 32649746
Alignment:
| Q |
123 |
acaaacgactgaactgaatctcaatcaaatagtggaacatcattttgattctacaatctattagttttcattcctcaaa-ttttcccccatttgcctata |
221 |
Q |
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||||| || |||||||||| ||||||||| || ||||||| ||||| |||||| ||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
32649626 |
acaaaagaatgaactgaatgtcaatcaaacag-ggaacataattttcattctataatctattagttttcattcctcaaatttttcccacatttgcctata |
32649724 |
T |
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| Q |
222 |
ttaatttactctattcaattcc |
243 |
Q |
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|||||| ||||| ||| ||||| |
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| T |
32649725 |
ttaattaactctcttccattcc |
32649746 |
T |
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