View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14952_low_6 (Length: 335)
Name: NF14952_low_6
Description: NF14952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14952_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 106 - 301
Target Start/End: Complemental strand, 11626165 - 11625971
Alignment:
| Q |
106 |
aacttttttgataaattaaagtatgctatctggcgcaattatggatacttaagatttttatatgattaaggagacatttttgttttctgtatcgtgcatg |
205 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11626165 |
aacttttttgataaattaaagtatgttatctcgcgcaattatggatacttaagatttttatatgattaaggagacatttttgttttctgtatcgtgcatg |
11626066 |
T |
|
| Q |
206 |
tttgatatcacggtgactttgtcaaaatcatagactgcaacgaatccactgtgatactaaacatgtactgcgagtatcaattcgctgtgtttattg |
301 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
11626065 |
tttgatatcacggtggctttgtc-aaatcatagacggcaacgaatccactgtgatactaaacatgtaccgtgagtatcaattcgctgtgtttattg |
11625971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University