View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14952_low_8 (Length: 307)

Name: NF14952_low_8
Description: NF14952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14952_low_8
NF14952_low_8
[»] chr8 (2 HSPs)
chr8 (1-307)||(35851633-35851941)
chr8 (29-72)||(3174740-3174783)
[»] chr2 (4 HSPs)
chr2 (26-116)||(30410511-30410601)
chr2 (26-77)||(2750588-2750639)
chr2 (27-110)||(45026773-45026856)
chr2 (26-120)||(13803515-13803609)
[»] chr7 (4 HSPs)
chr7 (26-116)||(17113819-17113909)
chr7 (26-77)||(29785263-29785314)
chr7 (26-77)||(31835255-31835306)
chr7 (26-99)||(37162312-37162385)
[»] chr4 (5 HSPs)
chr4 (26-116)||(7292760-7292850)
chr4 (26-116)||(16581717-16581807)
chr4 (26-113)||(2184994-2185081)
chr4 (26-72)||(15180806-15180852)
chr4 (26-142)||(37109313-37109429)
[»] chr5 (3 HSPs)
chr5 (26-142)||(25627055-25627170)
chr5 (26-141)||(19043457-19043571)
chr5 (26-142)||(6844727-6844843)
[»] chr1 (5 HSPs)
chr1 (48-116)||(12993919-12993987)
chr1 (26-77)||(2799925-2799976)
chr1 (26-77)||(40810530-40810581)
chr1 (26-72)||(3679276-3679322)
chr1 (26-72)||(8177144-8177190)
[»] scaffold0180 (1 HSPs)
scaffold0180 (29-116)||(19928-20014)
[»] chr6 (2 HSPs)
chr6 (26-77)||(11306136-11306187)
chr6 (26-72)||(9583433-9583479)
[»] chr3 (1 HSPs)
chr3 (26-77)||(15048023-15048074)


Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 35851941 - 35851633
Alignment:
Q  1 acaaataattaacgcatannnnnnnaagaagctaaactaacccgcccaaattagcaccagagataatcgaacatgagtgtttgagaagaaacatactcca 100  Q
    ||||||||||||||||||       ||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||    
T  35851941 acaaataattaacgcatatttttttaagaagctaaactaacctgcccaaattagcaccagagataatcgaacatgagactttgagaagaaatatactcca 35851842  T
Q  101 aagttccaagccaatatcaccgcgtcaacccaagttggttaacccatatatatttaattgcttttttaaggaatatttaattgttgtttatttcctcaaa 200  Q
    |||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35851841 aagttctaagccaatatcaccgggtcaacccaagtaggttaacccatatatatttaattgcttttttaaggaatatttaattgtagtttatttcctcaaa 35851742  T
Q  201 ataatttaggcagacatctccagacagattaaagcattcttgc--nnnnnnnnnnnnnnnncctacggcaattgtagtcctattaatatattttgctcat 298  Q
    |||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||||||||||||||||    
T  35851741 ataatttaggcagacatctccagacagattaaagcattcttgcaaaaacaaaaacaaaaaacctacggcaattgtagtcctattaatatattttgctcat 35851642  T
Q  299 ccaaaagaa 307  Q
    |||||||||    
T  35851641 ccaaaagaa 35851633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 3174740 - 3174783
Alignment:
Q  29 aagctaaactaacccgcccaaattagcaccagagataatcgaac 72  Q
    |||||||||||| || ||||||||||||||||||| ||||||||    
T  3174740 aagctaaactaaaccacccaaattagcaccagagagaatcgaac 3174783  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 116
Target Start/End: Original strand, 30410511 - 30410601
Alignment:
Q  26 aagaagctaaactaacccgcccaaattagcaccagagataatcgaacatgagtgtttgagaagaaacatactccaaagttccaagccaata 116  Q
    |||||||||||||||||| | |||||| |||||||||| ||||||||||||||  ||||| || | || ||||| | || |||||||||||    
T  30410511 aagaagctaaactaaccccctcaaattggcaccagagaaaatcgaacatgagtccttgaggaggagcacactcctaggtcccaagccaata 30410601  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 2750588 - 2750639
Alignment:
Q  26 aagaagctaaactaacccgcccaaattagcaccagagataatcgaacatgag 77  Q
    |||||||||||||||||| | |||||| |||| ||||| |||||||||||||    
T  2750588 aagaagctaaactaaccccctcaaattggcactagagagaatcgaacatgag 2750639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 45026856 - 45026773
Alignment:
Q  27 agaagctaaactaacccgcccaaattagcaccagagataatcgaacatgagtgtttgagaagaaacatactccaaagttccaag 110  Q
    ||||||||||||||||| | |||||| |||||||||| |||| ||||||||   ||||| || | || ||||| ||||||||||    
T  45026856 agaagctaaactaaccccctcaaattggcaccagagagaatcaaacatgagaccttgaggaggagcacactcctaagttccaag 45026773  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 13803609 - 13803515
Alignment:
Q  26 aagaagctaaactaacccgcccaaattagcaccagagataatcgaacatgagtgtttgagaagaaacatactccaaagttccaagccaatatcac 120  Q
    |||||| ||||||||||| | |||||| ||| ||||||||||||||| ||||   ||||| || | || ||||| ||||  ||||||||||||||    
T  13803609 aagaaggtaaactaaccccctcaaattggcatcagagataatcgaacctgagaccttgaggaggagcacactcctaagtctcaagccaatatcac 13803515  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 116
Target Start/End: Complemental strand, 17113909 - 17113819
Alignment:
Q  26 aagaagctaaactaacccgcccaaattagcaccagagataatcgaacatgagtgtttgagaagaaacatactccaaagttccaagccaata 116  Q
    |||||||||||||||||| | |||||||||| |||||| |||||||| ||||   ||||| |||| || ||||| | |||| |||||||||    
T  17113909 aagaagctaaactaaccccctcaaattagcatcagagagaatcgaacttgagaccttgaggagaagcacactcccaggttctaagccaata 17113819  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 29785263 - 29785314
Alignment:
Q  26 aagaagctaaactaacccgcccaaattagcaccagagataatcgaacatgag 77  Q
    |||||||||||||||||| | |||||| |||||||| | |||||||||||||    
T  29785263 aagaagctaaactaaccccctcaaattggcaccagaaagaatcgaacatgag 29785314  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 31835306 - 31835255
Alignment:
Q  26 aagaagctaaactaacccgcccaaattagcaccagagataatcgaacatgag 77  Q
    |||||||||||||| |||||| ||||| ||||||| ||||||||||| ||||    
T  31835306 aagaagctaaactagcccgccaaaattggcaccagggataatcgaacctgag 31835255  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 37162312 - 37162385
Alignment:
Q  26 aagaagctaaactaacccgcccaaattagcaccagagataatcgaacatgagtgtttgagaagaaacatactcc 99  Q
    ||||||||||||||| || | |||||| |||||||||| |||||||| ||||   |||||||||| || |||||    
T  37162312 aagaagctaaactaatcccctcaaattggcaccagagagaatcgaacttgagaccttgagaagaagcacactcc 37162385  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 116
Target Start/End: Original strand, 7292760 - 7292850
Alignment:
Q  26 aagaagctaaactaacccgcccaaattagcaccagagataatcgaacatgagtgtttgagaagaaacatactccaaagttccaagccaata 116  Q
    |||||||||||||||||| | |||||| |||| ||||| |||||||| ||||  |||||| || | || ||||| | ||||||||||||||    
T  7292760 aagaagctaaactaaccccctcaaattggcactagagagaatcgaacctgagactttgaggaggagcacactcccaggttccaagccaata 7292850  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 116
Target Start/End: Complemental strand, 16581807 - 16581717
Alignment:
Q  26 aagaagctaaactaacccgcccaaattagcaccagagataatcgaacatgagtgtttgagaagaaacatactccaaagttccaagccaata 116  Q
    |||||||||||||||||| | |||||| |||||||||||||| |||| ||||   ||||| || | || ||||| | ||||||||||||||    
T  16581807 aagaagctaaactaaccctctcaaattggcaccagagataatagaacctgagaccttgaggaggagcagactcccaggttccaagccaata 16581717  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 2184994 - 2185081
Alignment:
Q  26 aagaagctaaactaacccgcccaaattagcaccagagataatcgaacatgagtgtttgagaagaaacatactccaaagttccaagcca 113  Q
    |||||||||||||||||| | |||||| ||| | |||| |||||||| ||||  ||||||||| | || ||||| | |||||||||||    
T  2184994 aagaagctaaactaaccccctcaaattggcatcggagagaatcgaacctgagactttgagaaggagcacactcccaggttccaagcca 2185081  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 15180852 - 15180806
Alignment:
Q  26 aagaagctaaactaacccgcccaaattagcaccagagataatcgaac 72  Q
    |||||||||||||||||| | |||||| |||||||||| ||||||||    
T  15180852 aagaagctaaactaaccccctcaaattggcaccagagagaatcgaac 15180806  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 142
Target Start/End: Original strand, 37109313 - 37109429
Alignment:
Q  26 aagaagctaaactaacccgcccaaattagcaccagagataatcgaacatgagtgtttgagaagaaacatactccaaagttccaagccaatatcaccgcgt 125  Q
    ||||| |||||||||||| | |||||| |||||||||| |||||||| ||||   ||||| || | || ||||| | || ||||||||||| |||   |     
T  37109313 aagaaactaaactaaccccctcaaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggc 37109412  T
Q  126 caacccaagttggttaa 142  Q
    |||||||||| ||||||    
T  37109413 caacccaagtgggttaa 37109429  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 142
Target Start/End: Complemental strand, 25627170 - 25627055
Alignment:
Q  26 aagaagctaaactaacccgcccaaattagcaccagagataatcgaacatgagtgtttgagaagaaacatactccaaagttccaagccaatatcaccgcgt 125  Q
    |||||||||||||||||| | ||||||  ||||||||| |||||||| ||||   ||||| || | || ||||| |||||||||||||||| |||   |     
T  25627170 aagaagctaaactaaccc-ctcaaattgacaccagagagaatcgaacctgagaccttgaggaggagcacactcccaagttccaagccaataccactaggc 25627072  T
Q  126 caacccaagttggttaa 142  Q
    |||||||||| ||||||    
T  25627071 caacccaagtgggttaa 25627055  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 141
Target Start/End: Complemental strand, 19043571 - 19043457
Alignment:
Q  26 aagaagctaaactaacccgcccaaattagcaccagagataatcgaacatgagtgtttgagaagaaacatactccaaagttccaagccaatatcaccgcgt 125  Q
    |||||||||||||||||| | |||||| |||| |||||  || |||| ||||  ||||||||| |||| ||||| |||||||||| ||||| |||   |     
T  19043571 aagaagctaaactaaccc-ctcaaattggcactagagaggattgaacctgagactttgagaaggaacacactcccaagttccaagtcaatagcactaggc 19043473  T
Q  126 caacccaagttggtta 141  Q
    |||||||||| |||||    
T  19043472 caacccaagtgggtta 19043457  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 142
Target Start/End: Complemental strand, 6844843 - 6844727
Alignment:
Q  26 aagaagctaaactaacccgcccaaattagcaccagagataatcgaacatgagtgtttgagaagaaacatactccaaagttccaagccaatatcaccgcgt 125  Q
    ||||||||||||||| || || ||||| |||| |||||||||||||| | ||   | ||| || |||| ||||| || ||||||| ||||| ||||  |     
T  6844843 aagaagctaaactaatccacctaaattggcacgagagataatcgaaccttagacctcgaggaggaacacactcccaaattccaagtcaataccacctggc 6844744  T
Q  126 caacccaagttggttaa 142  Q
    |||||||||| ||||||    
T  6844743 caacccaagtgggttaa 6844727  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 12993987 - 12993919
Alignment:
Q  48 aaattagcaccagagataatcgaacatgagtgtttgagaagaaacatactccaaagttccaagccaata 116  Q
    ||||||||||||||||||||||||| ||||  ||||||||||| || | | |||| ||||||| |||||    
T  12993987 aaattagcaccagagataatcgaacctgagactttgagaagaagcacatttcaaaattccaagtcaata 12993919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 2799976 - 2799925
Alignment:
Q  26 aagaagctaaactaacccgcccaaattagcaccagagataatcgaacatgag 77  Q
    |||||||||||||||||| | |||||| |||||||||| |||||||| ||||    
T  2799976 aagaagctaaactaaccccctcaaattggcaccagagagaatcgaacctgag 2799925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 40810581 - 40810530
Alignment:
Q  26 aagaagctaaactaacccgcccaaattagcaccagagataatcgaacatgag 77  Q
    |||||||||||||||||| | |||||| |||||||||| |||||||| ||||    
T  40810581 aagaagctaaactaaccctctcaaattggcaccagagagaatcgaacctgag 40810530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 3679276 - 3679322
Alignment:
Q  26 aagaagctaaactaacccgcccaaattagcaccagagataatcgaac 72  Q
    |||||||||||||||||| | |||||| |||||||||| ||||||||    
T  3679276 aagaagctaaactaaccccctcaaattggcaccagagagaatcgaac 3679322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 8177144 - 8177190
Alignment:
Q  26 aagaagctaaactaacccgcccaaattagcaccagagataatcgaac 72  Q
    |||||||||||||||||| | |||||| |||||||||| ||||||||    
T  8177144 aagaagctaaactaaccccctcaaattggcaccagagagaatcgaac 8177190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 19928 - 20014
Alignment:
Q  29 aagctaaactaacccgcccaaattagcaccagagataatcgaacatgagtgtttgagaagaaacatactccaaagttccaagccaata 116  Q
    ||||||||||||||| | ||||||| ||||||||| |||||||| ||||   ||||| || | |||||||| | ||||||||||||||    
T  19928 aagctaaactaaccc-ctcaaattaacaccagagagaatcgaacctgagaccttgaggaggagcatactcccaggttccaagccaata 20014  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 11306136 - 11306187
Alignment:
Q  26 aagaagctaaactaacccgcccaaattagcaccagagataatcgaacatgag 77  Q
    |||||||||||||||||| | |||||| |||||||||| |||||||| ||||    
T  11306136 aagaagctaaactaaccccctcaaattggcaccagagagaatcgaacctgag 11306187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 9583479 - 9583433
Alignment:
Q  26 aagaagctaaactaacccgcccaaattagcaccagagataatcgaac 72  Q
    |||||||||||||||||| || ||||| |||||||||| ||||||||    
T  9583479 aagaagctaaactaacccaccgaaattggcaccagagagaatcgaac 9583433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 15048023 - 15048074
Alignment:
Q  26 aagaagctaaactaacccgcccaaattagcaccagagataatcgaacatgag 77  Q
    |||||| ||||||||||| | |||||| ||||||||||||||||||| ||||    
T  15048023 aagaagttaaactaaccccctcaaattggcaccagagataatcgaacctgag 15048074  T

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