View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14953_high_1 (Length: 351)
Name: NF14953_high_1
Description: NF14953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14953_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 17455029 - 17455239
Alignment:
| Q |
1 |
ctttgtattacatgtatccattttatggaatgcttgcatgaaaaaaggaatagttatatgcatttacaactactcaaatctgtattcttagcactacgca |
100 |
Q |
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| T |
17455029 |
ctttgtattacatgtatccattttagggaatgcttgcatgaaaaaaggattagttatatgcatttacaactactcaaatctgtattcttagcactacgca |
17455128 |
T |
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| Q |
101 |
ttagatcaaacaaatagaccctcaatcagaacaaaagacatccaagaacagcattgttgaactctccatcacttgatcttggtcatcagtccatgtaacc |
200 |
Q |
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| T |
17455129 |
ttagatcaaacaaatagaccctcaatcagaacaaaagacatccaagaacagcattgttgaactctccatcacttgatcttggtcatcagtccatgtaacc |
17455228 |
T |
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| Q |
201 |
ttgggcagatt |
211 |
Q |
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||||||||||| |
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| T |
17455229 |
ttgggcagatt |
17455239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 206 - 333
Target Start/End: Original strand, 17455390 - 17455517
Alignment:
| Q |
206 |
cagatttcatctctgatttatttttcgccgtgtccaacagaaaacttcctccattccatactgatacagaaagcttaattattttgaagagtgcatgcaa |
305 |
Q |
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| T |
17455390 |
cagatttcatctctgatttatttttcgccgtgtccaacagaaaacttcctccattccatactgatacagaaagcttaattattttgaagagtgcatgcaa |
17455489 |
T |
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| Q |
306 |
ttcaaatgacaagaatatggggacagtc |
333 |
Q |
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| T |
17455490 |
ttcaaatgacaagaatatggggacagtc |
17455517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 143 - 333
Target Start/End: Complemental strand, 17461704 - 17461507
Alignment:
| Q |
143 |
caagaacagcattgttgaactctccatcacttgatcttggtcatcagt----ccatgtaaccttgggcagatttcatctctgatttatttttcgccgtg- |
237 |
Q |
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| T |
17461704 |
caagaacagcattgttgagctctccatcacttgaccttggtcattggttggtccatttgaccttggaaaggttttagctctgatctatttttctccttaa |
17461605 |
T |
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| Q |
238 |
--tccaacagaaaacttcctccattccatactgatacagaaagcttaattattttgaagagtgcatgcaattcaaatgacaagaatatggggacagtc |
333 |
Q |
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| T |
17461604 |
cttccaacagaaaacttccttcgttccatactgatacagcaagcttaattatttggaagaaagcatgcaatttatatgagaagaatatggggacagtc |
17461507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 141
Target Start/End: Complemental strand, 17461886 - 17461737
Alignment:
| Q |
8 |
ttacatgtatccattttatggaatgcttgcatgaaaaaagga----------atagttatatgcatttacaa------ctactcaaatctgtattcttag |
91 |
Q |
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||||| |||||||||||||||||||||||||||| ||||| | ||| | |||||||||||||| |||||||||| ||||| |||| |
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| T |
17461886 |
ttacaagtatccattttatggaatgcttgcatgagaaaagaaaatgagtaatatactaatatgcatttacaactccacctactcaaatttgtatacttaa |
17461787 |
T |
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| Q |
92 |
cactacgcattagatcaaacaaatagaccctcaatcagaacaaaagacat |
141 |
Q |
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| T |
17461786 |
cactacgaattagatcaaacaaatagaacctcaatcagaacaaaaaacat |
17461737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 238 - 331
Target Start/End: Complemental strand, 52143035 - 52142942
Alignment:
| Q |
238 |
tccaacagaaaacttcctccattccatactgatacagaaagcttaattattttgaagagtgcatgcaattcaaatgacaagaatatggggacag |
331 |
Q |
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| T |
52143035 |
tccaacaggaaacttccaccgttccatactgaagcagaaaccttaagtatttggaagattacatgcaattcatatgacaggaatatggggacag |
52142942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 774797 - 774843
Alignment:
| Q |
1 |
ctttgtattacatgtatccattttatggaatgcttgcatgaaaaaag |
47 |
Q |
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|||||| ||||| |||||||||||| ||||||||||||||||||||| |
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| T |
774797 |
ctttgttttacaagtatccattttagggaatgcttgcatgaaaaaag |
774843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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