View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14953_high_3 (Length: 295)

Name: NF14953_high_3
Description: NF14953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14953_high_3
NF14953_high_3
[»] chr4 (5 HSPs)
chr4 (1-295)||(49521135-49521429)
chr4 (1-82)||(49532131-49532216)
chr4 (1-65)||(49701938-49702002)
chr4 (3-72)||(49485433-49485500)
chr4 (47-94)||(49532420-49532467)


Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 49521135 - 49521429
Alignment:
Q  1 aaagttcatctttctttcctctcaatgatggcagaacctagtgattagaaaatcatattagttttaatcatgttattgttaataactatactatgctaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49521135 aaagttcatctttctttcctctcaatgatggcagaacctagtgattagaaaatcatattagttttaatcatgttattgttaataactatactatgctaag 49521234  T
Q  101 aaactaacagtcattacatagcagtttgtaaagattagctattattaagcaaatagtaatatattatatttcaaaatttggttttaaaggatattctata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49521235 aaactaacagtcattacatagcagtttgtaaagattagctattattaagcaaatagtaatatattatatttcaaaatttggttttaaaggatattctata 49521334  T
Q  201 ttaccgaacccaagtaacttcggactctttctctttaattttcattatatctcttccctctccaatttaatccatccctttcgattcaatcctac 295  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49521335 ttaccaaacccaagtaactttggactctttctctttaattttcattatatctcttccctctccaatttaatccatccctttcgattcaatcctac 49521429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 49532131 - 49532216
Alignment:
Q  1 aaagttcatctttctttcctctcaatgatggcagaacctagtgattagaa----aatcatattagttttaatcatgttattgttaa 82  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||    ||||||||||||||||||||| ||| ||||||    
T  49532131 aaagttcatctttctttcctctcaacgatggcagaacctagtgataagaaaatcaatcatattagttttaatcatcttaatgttaa 49532216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 49701938 - 49702002
Alignment:
Q  1 aaagttcatctttctttcctctcaatgatggcagaacctagtgattagaaaatcatattagtttt 65  Q
    ||||||||||||||||| ||||||| |||||||||||||| |||| ||||||||| |||||||||    
T  49701938 aaagttcatctttcttttctctcaaagatggcagaacctaatgataagaaaatcacattagtttt 49702002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 49485433 - 49485500
Alignment:
Q  3 agttcatctttctttcctctcaatgatggcagaacctagtgattagaaaatcatattagttttaatcatg 72  Q
    ||||||||||| ||| ||||||| ||||| ||||||||||||| ||||||||  ||||||||||||||||    
T  49485433 agttcatctttattttctctcaaagatggaagaacctagtgataagaaaatc--attagttttaatcatg 49485500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 49532420 - 49532467
Alignment:
Q  47 agaaaatcatattagttttaatcatgttattgttaataactatactat 94  Q
    |||||||||||||| ||||||||||| ||||||||||  |||||||||    
T  49532420 agaaaatcatattaattttaatcatggtattgttaatgcctatactat 49532467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University