View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14953_low_1 (Length: 562)
Name: NF14953_low_1
Description: NF14953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14953_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 36 - 542
Target Start/End: Complemental strand, 45103497 - 45102987
Alignment:
| Q |
36 |
gggggataagggagaagaaagaacagacaaagaatcgtgaaatacgatccaatattaattactttcaactgatatatataaatgcaatgtactataatgg |
135 |
Q |
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| T |
45103497 |
gggggataagggagaagaaagaacagacaaagaatcgtgaaatacgatccaatattaattactttcgactgatatatataaatgcaatgtactataatgg |
45103398 |
T |
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| Q |
136 |
acatttttatttaattttacaacaattattgtaataatttgtcaacnnnnnnnnnnnnn--caattattgtaattgtggaccgtattgccaaacattagg |
233 |
Q |
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| T |
45103397 |
acatttttatttaattttacaacaattattgtaataatttgtcaacaaaaaaaaaaaaaaacaattattgtaattgtggaccgtattgccaaacattagg |
45103298 |
T |
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| Q |
234 |
tcggcccaatatgtggcccgtatacaatgtgggtcaggtgacttgaggtccgattgagatgagacatggtattggtaggaatcaatggcatcatgcatac |
333 |
Q |
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| T |
45103297 |
tcgccccaatatgtggcccgtatacaatgtgggtcaggtgacttgaggtccgattgagatgagacatggtattggtaggaatcaatggcatcatgcatac |
45103198 |
T |
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| Q |
334 |
catcatgtagatgtagagacttctaaaattttgttaggctatggaaaagaatatgttcataagaaagaaacaagcgagaaagaacaaagaaataaagtg- |
432 |
Q |
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| T |
45103197 |
catcatgtagatgtagagacttctagaattttgttaggcaatggaaaagaatatgtttagaagaaagaaacaagcgagaaagaacaaagaaataaattgt |
45103098 |
T |
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| Q |
433 |
nnnnnnncttct-ttttgtatcatttagtataagaaaaagagaagtgaaaatgaagaaaatcatgtttgtgatcctaaatgaagctaaagacaacagttg |
531 |
Q |
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| T |
45103097 |
ttttttttttctcttttgtatcatttagtataagaaaaagagaagtgaaaatgaagaaaatcatgtttgtgatcctaagtgaagctaaagacaacagttg |
45102998 |
T |
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| Q |
532 |
gagttactcga |
542 |
Q |
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| T |
45102997 |
gagttactcga |
45102987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 79 - 177
Target Start/End: Complemental strand, 45130132 - 45130034
Alignment:
| Q |
79 |
acgatccaatattaattactttcaactgatatatataaatgcaatgtactataatggacatttttatttaattttacaacaattattgtaataatttgt |
177 |
Q |
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|||||| || ||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||| |||| |
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| T |
45130132 |
acgatcgaacattaattactttcgactgctatatataaatgcaatgtatcataatggacatttttattttattttacaacaattattgtgataacttgt |
45130034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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