View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14953_low_14 (Length: 213)
Name: NF14953_low_14
Description: NF14953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14953_low_14 |
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| [»] scaffold2116 (1 HSPs) |
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| [»] scaffold1268 (1 HSPs) |
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| [»] scaffold1267 (1 HSPs) |
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| [»] scaffold0891 (1 HSPs) |
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Alignment Details
Target: scaffold2116 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: scaffold2116
Description:
Target: scaffold2116; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 882 - 1063
Alignment:
| Q |
16 |
cacagatctaaatgatgtaatgtttaatttccaaggttctgaagcacaaaattgtataagatcatcaatgattataatcaacacttttgatgaattggaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
882 |
cacagatctaaatgatgtaatgtttaatttccaaggttctgaagcacaaaattgtataagatcatcaatgattataatcaacacttttgatgaattggaa |
981 |
T |
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| Q |
116 |
ggtgaagcacttgacacccttagggccaaaaaccctaacatatatgacattggtccacttcacatgcttggtaggcactttc |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
982 |
ggtgaagcacttgacacccttagggccaaaaaccctaacatatatgacattggtccacttcacatgcttggtaggcactttc |
1063 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1268 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold1268
Description:
Target: scaffold1268; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 2048 - 2229
Alignment:
| Q |
16 |
cacagatctaaatgatgtaatgtttaatttccaaggttctgaagcacaaaattgtataagatcatcaatgattataatcaacacttttgatgaattggaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
2048 |
cacagatctaaatgatgtaatgtttaatttccaaggttctaaagcacacaattgtttaagatcatcaatgattataatcaacacatttgaagaattggaa |
2147 |
T |
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| Q |
116 |
ggtgaagcacttgacacccttagggccaaaaaccctaacatatatgacattggtccacttcacatgcttggtaggcactttc |
197 |
Q |
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| T |
2148 |
ggtgaagcacttgacacccttagggccaaaaaccctaacatatatgacattggtccacttcacatgcttggtaggcactttc |
2229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1267 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold1267
Description:
Target: scaffold1267; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 2048 - 2229
Alignment:
| Q |
16 |
cacagatctaaatgatgtaatgtttaatttccaaggttctgaagcacaaaattgtataagatcatcaatgattataatcaacacttttgatgaattggaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
2048 |
cacagatctaaatgatgtaatgtttaatttccaaggttctaaagcacacaattgtttaagatcatcaatgattataatcaacacatttgaagaattggaa |
2147 |
T |
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| Q |
116 |
ggtgaagcacttgacacccttagggccaaaaaccctaacatatatgacattggtccacttcacatgcttggtaggcactttc |
197 |
Q |
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| T |
2148 |
ggtgaagcacttgacacccttagggccaaaaaccctaacatatatgacattggtccacttcacatgcttggtaggcactttc |
2229 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 95 - 197
Target Start/End: Complemental strand, 35848865 - 35848763
Alignment:
| Q |
95 |
aacacttttgatgaattggaaggtgaagcacttgacacccttagggccaaaaaccctaacatatatgacattggtccacttcacatgcttggtaggcact |
194 |
Q |
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||||| ||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | |
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| T |
35848865 |
aacacatttgaagaattagaaggtgaagccctggacacccttagggccaaaaaccctaacatatatagcattggcccacttcacatgcttggtaggcatt |
35848766 |
T |
|
| Q |
195 |
ttc |
197 |
Q |
| |
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||| |
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| T |
35848765 |
ttc |
35848763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 95 - 197
Target Start/End: Complemental strand, 35866536 - 35866434
Alignment:
| Q |
95 |
aacacttttgatgaattggaaggtgaagcacttgacacccttagggccaaaaaccctaacatatatgacattggtccacttcacatgcttggtaggcact |
194 |
Q |
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||||| ||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | |
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| T |
35866536 |
aacacatttgaagaattagaaggtgaagccctggacacccttagggccaaaaaccctaacatatatagcattggcccacttcacatgcttggtaggcatt |
35866437 |
T |
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| Q |
195 |
ttc |
197 |
Q |
| |
|
||| |
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| T |
35866436 |
ttc |
35866434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 35755036 - 35754867
Alignment:
| Q |
20 |
gatctaaatgatgtaatgtttaatttccaaggttctgaagcacaaaattgtataagatcatcaatgattataatcaacacttttgatgaattggaaggtg |
119 |
Q |
| |
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|||||||||||| | |||||| ||||| |||||||| ||||||| ||| | |||||||||| |||||||||||||| ||||| ||||| |||| || |
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| T |
35755036 |
gatctaaatgatattatgtttgatttcatgggttctgagtcacaaaactgtttgagatcatcaacaattataatcaacacatttgaagaattagaagatg |
35754937 |
T |
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| Q |
120 |
aagcacttgacacccttagggccaaaaaccctaacatatatgacattggtccacttcacatgcttggtag |
189 |
Q |
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||| ||| || |||| | |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35754936 |
aagtcattgctacacttaagaccaaaaaccctaacatatatagcattggtccacttcacatgcttggtag |
35754867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 35775072 - 35774990
Alignment:
| Q |
107 |
gaattggaaggtgaagcacttgacacccttagggccaaaaaccctaacatatatgacattggtccacttcacatgcttggtag |
189 |
Q |
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||||||||||||||| | |||||||||||||||||||| || || ||||||||| |||||| || |||||||||||||||| |
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| T |
35775072 |
gaattggaaggtgaaacccttgacacccttagggccaacaatccaaacatatatagcattggcccgattcacatgcttggtag |
35774990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 189
Target Start/End: Original strand, 2972 - 3101
Alignment:
| Q |
60 |
cacaaaattgtataagatcatcaatgattataatcaacacttttgatgaattggaaggtgaagcacttgacacccttagggccaaaaaccctaacatata |
159 |
Q |
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||||||||||| | |||||||| | || || || ||||| || || ||||||||||||||| | |||||||||||||||||||| || || |||||||| |
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| T |
2972 |
cacaaaattgtttgagatcatcgacaataatcattaacacgttcgaagaattggaaggtgaaacccttgacacccttagggccaacaatccaaacatata |
3071 |
T |
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| Q |
160 |
tgacattggtccacttcacatgcttggtag |
189 |
Q |
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| |||||| || |||||||||||||||| |
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| T |
3072 |
tagcattggcccgattcacatgcttggtag |
3101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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