View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14953_low_2 (Length: 445)
Name: NF14953_low_2
Description: NF14953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14953_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 2 - 428
Target Start/End: Complemental strand, 34579020 - 34578594
Alignment:
| Q |
2 |
atgactataattgttcaagcaatatttttgatcact-acaatttttatgcagaaatctaacttgtagtaaacgtatgcctggatcactgggacatgaaat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34579020 |
atgactataattgttcaagcaatatttttgatcacttacaatttttatgcagaaatctaacttgtagtaaacgtatgcctggatcactgggacatgaaat |
34578921 |
T |
|
| Q |
101 |
acaagatgccaaaacatttgcttcttgggtagataaaatatgcatacattactcaaaagtcaatttgtatatctatcaacattataccatatatataatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
34578920 |
acaagatgccaaaacatttgcttcttgggtatataaaatatgcatacattactcaaaagtaaatttgtatatctatcaacattataccatatatata-tc |
34578822 |
T |
|
| Q |
201 |
ctaggttgttaaccaatattgatttaaatttttgtttagggagttgactatttgaagtatgataattgtgaaaataacggaataaacgttcgcgaaaggt |
300 |
Q |
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|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34578821 |
ctaggttgttaaccagtattgatttaaatttttgtttagggagttgactatttgaagtatgataattgtgaaaataacggaataagcgttcgcgaaaggt |
34578722 |
T |
|
| Q |
301 |
atttaatatatggctttcaaatgcaaatttgtgtctacaaacttaatgttttgtaaaacccaatacttacatgtttcgtatgtattaaaaattaggtatc |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34578721 |
atttaatatatggctttcaaatgcaaatttgtgtctacaaacttaatgttttgtaaaacccaatacttacatgtttcgtatgtattaaaaattaggtatc |
34578622 |
T |
|
| Q |
401 |
caccaatgagtgaagctttattgaactc |
428 |
Q |
| |
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|||||||||||||||||||||| ||||| |
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| T |
34578621 |
caccaatgagtgaagctttattaaactc |
34578594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 36 - 430
Target Start/End: Complemental strand, 35124673 - 35124285
Alignment:
| Q |
36 |
ctacaatttttatgcagaaatctaacttgtagtaaacgtatgcctggatcactgggacatgaaatacaagatgccaaaacatttgcttcttgggtagata |
135 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35124673 |
ctacaatttttatgtagaaatctaacttgtagtaaacgcatgcctggatcactaggacatgaaatacaagatgccaaaacatttgcttcttgggtatatc |
35124574 |
T |
|
| Q |
136 |
aaatatgcatacattactcaaaagtcaatttgtatatctatcaacattataccatatatataatcctaggttgttaaccaatattgatttaaatttttgt |
235 |
Q |
| |
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| |||| ||| ||||| | |||| |||||| || |||| ||| |||||| ||| ||||| || |||||||||||| | | ||||||| |||| | |
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| T |
35124573 |
atatatacattcatta-ttgaaagccaattttcatttctaccaaaattata--ttatgcataattataagttgttaaccaacactaatttaaaattttct |
35124477 |
T |
|
| Q |
236 |
ttagggagttgactatttgaagtatgataattgtgaaaataacggaataaacgttcgcgaaaggtatttaatatatggctttcaaatgcaaatttgtgtc |
335 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| || |||| |||| | |||||||||||||| || | ||||| ||||||| | || |
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|
| T |
35124476 |
ttagggagtcgactatttgaagtatgataattgtgaaaataatggtataagcgttagagaaaggtatttaatcaatagtattcaattgcaaataagcatc |
35124377 |
T |
|
| Q |
336 |
tacaaacttaatgttttgtaaaacccaatacttacatgtttcgtatgtattaaaaattaggtatccaccaatgagtgaagctttattgaactctg |
430 |
Q |
| |
|
|||| || ||||||| ||||| ||||||||| ||||| || | || |||||||||| ||||||||||||||||| || || ||||||| |
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|
| T |
35124376 |
tacatac---atgttttataaaaatcaatacttattagtttcataaattttgtaaattaggtacccaccaatgagtgaagccttgttaaactctg |
35124285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 34594723 - 34594631
Alignment:
| Q |
39 |
caatttttatgcagaaatctaacttgtagtaaacgtatgcctggatcactgggacatgaaatacaagatgccaaaacatttgcttcttgggta |
131 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
34594723 |
caatttttatgcagaactcttacttgtagtaaacgcatgcctggatcactgggacatgaagaacaagatgctaaaacatttgcttcttgggta |
34594631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 34594510 - 34594456
Alignment:
| Q |
220 |
tgatttaaatttttgtttagggagttgactatttgaagtatgataattgtgaaaa |
274 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
34594510 |
tgatttaaatttttctttagggaattgactatttgaagtatgataattgtgaaaa |
34594456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 3 - 358
Target Start/End: Complemental strand, 32591205 - 32590847
Alignment:
| Q |
3 |
tgactataattgttcaagcaatatttttgatcact-acaatttttatgcagaaatctaacttgtagtaaacgtatgcctggatcactgggacatgaaata |
101 |
Q |
| |
|
||||||| ||||||||| || ||||| |||||||| |||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32591205 |
tgactatgattgttcaaacattatttatgatcacttacaattgctatgcagaaatcaaacttgtagtaaacgtatgcctggatcattgggacatgaaata |
32591106 |
T |
|
| Q |
102 |
caagatgccaaaacatttgcttcttgggtagataaaatatgcatacattactcaaaagtcaatttgtatatctatcaacattataccatatatataatcc |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||| || | |||| ||||||||| | ||||||| ||| | | ||||||||||||| | | | ||||||| |
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| T |
32591105 |
caagatgccaaaacatttgcttcttgggtatatcacatatacatacattatttgaaagtcatttttcacttttatcaacattatatcttgtttataatct |
32591006 |
T |
|
| Q |
202 |
taggttgttaaccaatattgatttaaatttttgtttagggagttgactatttgaagtatgataattgtgaaaataacggaataaacgttcgcgaaaggta |
301 |
Q |
| |
|
|| |||||||||||||| ||||||||| |||| |||||||||| |||||||||||||||||||||||| | ||||| || |||| |||| | |||||||| |
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|
| T |
32591005 |
tatgttgttaaccaatactgatttaaaattttctttagggagtcgactatttgaagtatgataattgtcacaataatggtataagcgttagagaaaggta |
32590906 |
T |
|
| Q |
302 |
tttaatatatggctttcaaatgcaaat--ttgtgtctacaaacttaatgttttgtaaaa |
358 |
Q |
| |
|
|||||| |||| ||||||||||||| | | |||||| ||||||| |||||||||| |
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|
| T |
32590905 |
tttaatttatgttcttcaaatgcaaataggtatatctacatacttaatattttgtaaaa |
32590847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 2 - 307
Target Start/End: Complemental strand, 32601675 - 32601369
Alignment:
| Q |
2 |
atgactataattgttcaagcaatatttttgatcact-acaatttttatgcagaaatctaacttgtagtaaacgtatgcctggatcactgggacatgaaat |
100 |
Q |
| |
|
|||| ||| |||||||||||| ||||| |||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
32601675 |
atgaatatgattgttcaagcattatttatgatcacttacaattgctatgcagaaatcaaacttgtagtaaacgtatgcctggatcactaggacatgaaat |
32601576 |
T |
|
| Q |
101 |
acaagatgccaaaacatttgcttcttgggtagataaaatatgcatacattactcaaaagtcaatttgtatatctatcaacattataccatatatataatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | |||| ||||||||| | ||| ||| ||| | | ||||||||||||| ||| | ||| | |
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|
| T |
32601575 |
acaagatgccaaaacatttgcttcttgggtaaaccatatatacatacattatttgaaaatcatttttcaattttatcaacattatattctatttctaacc |
32601476 |
T |
|
| Q |
201 |
ctaggttgttaaccaatattgatttaaatttttgtttagggagttgactatttgaagtatgataattgtgaaaataacggaataaacgttcgcgaaaggt |
300 |
Q |
| |
|
|| ||||||||||||||||| || |||||||| |||||||||| |||||||||||||||||||||||||||||||| || |||| |||| | ||||||| |
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|
| T |
32601475 |
ttatgttgttaaccaatattggttcaaatttttctttagggagtcgactatttgaagtatgataattgtgaaaataatggtataagcgttagagaaaggt |
32601376 |
T |
|
| Q |
301 |
atttaat |
307 |
Q |
| |
|
||||||| |
|
|
| T |
32601375 |
atttaat |
32601369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 24882965 - 24883058
Alignment:
| Q |
38 |
acaatttttatgcagaaatctaacttgtagtaaacgtatgcctggatcactgggacatgaaatacaagatgccaaaacatttgcttcttgggta |
131 |
Q |
| |
|
||||||| | |||||||||| ||| || |||||| | ||||| |||||| | || |||||| ||||||||| |||||||||||||| |||||| |
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|
| T |
24882965 |
acaatttctctgcagaaatcaaacatgcagtaaaagaatgccaggatcattagggcatgaagaacaagatgcaaaaacatttgcttcatgggta |
24883058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 277
Target Start/End: Original strand, 24883124 - 24883166
Alignment:
| Q |
235 |
tttagggagttgactatttgaagtatgataattgtgaaaataa |
277 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||| ||||| |
|
|
| T |
24883124 |
tttagggaattgactacttgaagtatgataattgtgagaataa |
24883166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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