View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14953_low_3 (Length: 379)
Name: NF14953_low_3
Description: NF14953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14953_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 8 - 362
Target Start/End: Complemental strand, 44029369 - 44029014
Alignment:
| Q |
8 |
cgaagaatattattgttaggaaacaaatattgtagagaacaactattatatataagactaaaaaggttgaccctatatcatcctttattttagttatatc |
107 |
Q |
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| T |
44029369 |
cgaaaaatattattgttaggaaacaaatattgtagagaacaactattatatataagactaaaaaggttgaccctatatcatcctttattttagttatatc |
44029270 |
T |
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| Q |
108 |
ccaacaaccttaaaataaactaaacgtagttattaacaacacatcatttcttaattaaagctgcagctaccaccaaagcatatataccaggtagctagtt |
207 |
Q |
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| T |
44029269 |
ccaacaaccttaaaataaactaaacgtagttattaacaacacatcatttcttaattaaagctgcagctaccaccaaagcatatataccaggtagctagtt |
44029170 |
T |
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| Q |
208 |
taattagcttcaatgtgatacatttaaatgaagaggatcattttctatgcaatcatttgaccaagaaagaaatcatag-aaaataaagttattatacata |
306 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44029169 |
taattagcttcaatgtgatgcatttaaatgaagaggatcattttctatgcaatcatttgaccaagaaagaaatcatagaaaaataaagttattatacata |
44029070 |
T |
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| Q |
307 |
ttctaatcaataaattagaatatcttgaaagtgcattttcagtgtgaattagtatt |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44029069 |
ttctaatcaataaattagaatatcttgaaagtgcattttcagtgtgaattagtatt |
44029014 |
T |
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