View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14953_low_5 (Length: 319)
Name: NF14953_low_5
Description: NF14953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14953_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 22 - 302
Target Start/End: Complemental strand, 40847554 - 40847274
Alignment:
| Q |
22 |
atgttgcaactcttaagtcttaaaagatccgtattggatcccataactttagctcacatatcaatattttatttatatttgttttttagtataagcttag |
121 |
Q |
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| T |
40847554 |
atgttgcaactcttaagtcttaaaagacccgtattgggtcccataactttagctcacatatcaatattttatttatatttgtttattagtataagcttag |
40847455 |
T |
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| Q |
122 |
cggccaactcatacacaagtaagcattgtgggagaaggcaaacagaaaggcttcccgtcttttgttggtggttacgatattattacaagacgcaagtact |
221 |
Q |
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| T |
40847454 |
cggccaactcatacacaagtaagcattgtgggagaaggcaaacagaaaggcttcccgtcttttgttggtggttacgatattattacaagacgcaagtact |
40847355 |
T |
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| Q |
222 |
ttacggaaaataaggaaaaacggttagtctcttagaacaccttaaatggtgcaacttggagtgttttacacgggatccact |
302 |
Q |
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| T |
40847354 |
ttacggaaaataaggaaaaaaggttagtctcttagaacaccttgaatggtgcaacttggagtgttttacacgggattcact |
40847274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 53 - 160
Target Start/End: Complemental strand, 40846309 - 40846202
Alignment:
| Q |
53 |
tattggatcccataactttagctcacatatcaatattttatttatatttgttttttagtataagcttagcggccaactcatacacaagtaagcattgtgg |
152 |
Q |
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| T |
40846309 |
tattgggtcccataactttaactcacatatcaatattttatttatatttgttttttagtataagcttagcggccaacttgtgcacaagtaagcatggtgg |
40846210 |
T |
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| Q |
153 |
gagaaggc |
160 |
Q |
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| T |
40846209 |
tagaaggc |
40846202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 40847697 - 40847643
Alignment:
| Q |
187 |
tggtggttacgatattattacaagacgcaagtactttacggaaaataaggaaaaa |
241 |
Q |
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| T |
40847697 |
tggtggttacgatattattacaagacataagtaattcacggaaaataagaaaaaa |
40847643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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