View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14953_low_6 (Length: 319)
Name: NF14953_low_6
Description: NF14953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14953_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 3643111 - 3643415
Alignment:
| Q |
1 |
cacaacagtgggactcaaaaggaatgaatgaacccaaagatgaatgatataataatcatgaatatcatgaatttaatatttggcaattcataagttgttg |
100 |
Q |
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| T |
3643111 |
cacaacagtgggactcaaaaggaatgaatgaacccaaagatgaatgatataataatcatgaatatcatgaatttaatatttggcaattcataagttgtta |
3643210 |
T |
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| Q |
101 |
ttggtttcatgacggtctatgtgtgtatttatttactttgatcgatgataatgttacaggaataaagaagaaatttgcggtgtataagaatcaaaactcg |
200 |
Q |
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| T |
3643211 |
ttggtttcatgacggcctatgtgtgtatttattttctttgattgatgataatgttacaggaataaagaagaaatttgcggtgtataagaatcaaaactcg |
3643310 |
T |
|
| Q |
201 |
caagttactaagcgaacttacaatccatgagggatgtttctagacggctcaactatccgtcatgttaagagttcaacaagtgaaaatgagcagaagatac |
300 |
Q |
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| T |
3643311 |
caagttactaagcgaacttacaatccatgagggatgtttctagacggctcaactatccgtcatgttaagagttcaacaagtgaaaatgagcagaagatac |
3643410 |
T |
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| Q |
301 |
tgatg |
305 |
Q |
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|||| |
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| T |
3643411 |
agatg |
3643415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 44878605 - 44878665
Alignment:
| Q |
128 |
tttatttactttgatcgatgataatgttacaggaataaagaagaaatttgcggtgtataag |
188 |
Q |
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| T |
44878605 |
tttatttactgtgattgatgataatgttataggaataaagaagaaatttgtggtgtataag |
44878665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 44881316 - 44881256
Alignment:
| Q |
128 |
tttatttactttgatcgatgataatgttacaggaataaagaagaaatttgcggtgtataag |
188 |
Q |
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|||||||||| |||| ||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
44881316 |
tttatttactgtgattgatgataatgttataggaataaagaagaaatttgtggtgtataag |
44881256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 33987717 - 33987770
Alignment:
| Q |
1 |
cacaacagtgggactcaaaaggaatgaatgaacccaaagatgaatgatataata |
54 |
Q |
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|||||| |||| |||||||| ||||||||||| |||||||||| ||||||||| |
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| T |
33987717 |
cacaactgtggcactcaaaacaaatgaatgaacacaaagatgaaagatataata |
33987770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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