View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14953_low_8 (Length: 286)
Name: NF14953_low_8
Description: NF14953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14953_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 39193561 - 39193802
Alignment:
| Q |
18 |
actaaagtcttattcttctaagaatgaa-ggttgacnnnnnnngtcatgaatacgatcttttattatccaaataggtttttcgtttgaccatttagactt |
116 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||| ||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
39193561 |
actaaagtcttattcttctaagaacgaaaggttgacaaaaaaagtcatgaatgcgatcttttattatccaaatagatttttggtttgaccatttagactt |
39193660 |
T |
|
| Q |
117 |
attcttgtgtgattcaatcgcccagttatcttggggcgtatgtatgatagattaactaaatatgttcttttttaaacaagagattaacttaatatgttaa |
216 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||| | ||||| ||||||||||||||||||| |||||| |
|
|
| T |
39193661 |
attcttgtgtgattcaatcgcccggttatcttggggcgtatgtatcatagcttaactaaatatat--attttttaacaagagattaacttaatgtgttaa |
39193758 |
T |
|
| Q |
217 |
aatttattgagatttaataatataaaatagattttgacattatttt |
262 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39193759 |
aatttatt--gatttaataatataaaatagattttgacattttttt |
39193802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University